Auto-detection and segmentation of involved lymph nodes in HPV-associated oropharyngeal cancer using a convolutional deep learning neural network

Purpose: Segmentation of involved lymph nodes on head and neck computed tomography (HN-CT) scans is necessary for the radiotherapy planning of early-stage human papilloma virus (HPV) associated oropharynx cancers (OPC). We aimed to train a deep learning convolutional neural network (DL-CNN) to segme...

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發表在:Clinical and Translational Radiation Oncology
Main Authors: Nicolette Taku, Kareem A. Wahid, Lisanne V. van Dijk, Jaakko Sahlsten, Joel Jaskari, Kimmo Kaski, Clifton D. Fuller, Mohamed A. Naser
格式: Article
語言:英语
出版: Elsevier 2022-09-01
在線閱讀:http://www.sciencedirect.com/science/article/pii/S2405630822000520
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author Nicolette Taku
Kareem A. Wahid
Lisanne V. van Dijk
Jaakko Sahlsten
Joel Jaskari
Kimmo Kaski
Clifton D. Fuller
Mohamed A. Naser
author_facet Nicolette Taku
Kareem A. Wahid
Lisanne V. van Dijk
Jaakko Sahlsten
Joel Jaskari
Kimmo Kaski
Clifton D. Fuller
Mohamed A. Naser
author_sort Nicolette Taku
collection DOAJ
container_title Clinical and Translational Radiation Oncology
description Purpose: Segmentation of involved lymph nodes on head and neck computed tomography (HN-CT) scans is necessary for the radiotherapy planning of early-stage human papilloma virus (HPV) associated oropharynx cancers (OPC). We aimed to train a deep learning convolutional neural network (DL-CNN) to segment involved lymph nodes on HN-CT scans. Methods: Ground-truth segmentation of involved nodes was performed on pre-surgical HN-CT scans for 90 patients who underwent levels II-IV neck dissection for node-positive HPV-OPC (training/validation [n = 70] and testing [n = 20]). A 5-fold cross validation approach was used to train 5 DL-CNN sub-models based on a residual U-net architecture. Validation and testing segmentation masks were compared to ground-truth masks using predetermined metrics. A lymph auto-detection model to discriminate between “node-positive” and “node-negative” HN-CT scans was developed by thresholding segmentation model outputs and evaluated using the area under the receiver operating characteristic curve (AUC). Results: In the DL-CNN validation phase, all sub-models yielded segmentation masks with median Dice ≥ 0.90 and median volume similarity score of ≥ 0.95. In the testing phase, the DL-CNN produced consensus segmentation masks with median Dice of 0.92 (IQR, 0.89–0.95), median volume similarity of 0.97 (IQR, 0.94–0.99), and median Hausdorff distance of 4.52 mm (IQR, 1.22–8.38). The detection model achieved an AUC of 0.98. Conclusion: The results from this single-institution study demonstrate the successful automation of lymph node segmentation for patients with HPV-OPC using a DL-CNN. Future studies, including validation with an external dataset, are necessary to clarify its role in the larger radiation oncology treatment planning workflow.
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spelling doaj-art-acef4a8ea97a4eaea5d9d9663a1f77152025-08-19T21:00:06ZengElsevierClinical and Translational Radiation Oncology2405-63082022-09-0136475510.1016/j.ctro.2022.06.007Auto-detection and segmentation of involved lymph nodes in HPV-associated oropharyngeal cancer using a convolutional deep learning neural networkNicolette Taku0Kareem A. Wahid1Lisanne V. van Dijk2Jaakko Sahlsten3Joel Jaskari4Kimmo Kaski5Clifton D. Fuller6Mohamed A. Naser7Department of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, United StatesDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, United StatesDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, United States; Department of Radiation Oncology, University Medical Center Groningen, University of Groningen, Groningen, NetherlandsAalto University School of Science, Aalto, FinlandAalto University School of Science, Aalto, FinlandDepartment of Radiation Oncology, University Medical Center Groningen, University of Groningen, Groningen, NetherlandsDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, United StatesDepartment of Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, United States; Corresponding author at: The University of Texas MD Anderson Cancer Center, Department of Radiation Oncology, 1515 Holcombe Blvd., Houston, TX 77030-4009, United States.Purpose: Segmentation of involved lymph nodes on head and neck computed tomography (HN-CT) scans is necessary for the radiotherapy planning of early-stage human papilloma virus (HPV) associated oropharynx cancers (OPC). We aimed to train a deep learning convolutional neural network (DL-CNN) to segment involved lymph nodes on HN-CT scans. Methods: Ground-truth segmentation of involved nodes was performed on pre-surgical HN-CT scans for 90 patients who underwent levels II-IV neck dissection for node-positive HPV-OPC (training/validation [n = 70] and testing [n = 20]). A 5-fold cross validation approach was used to train 5 DL-CNN sub-models based on a residual U-net architecture. Validation and testing segmentation masks were compared to ground-truth masks using predetermined metrics. A lymph auto-detection model to discriminate between “node-positive” and “node-negative” HN-CT scans was developed by thresholding segmentation model outputs and evaluated using the area under the receiver operating characteristic curve (AUC). Results: In the DL-CNN validation phase, all sub-models yielded segmentation masks with median Dice ≥ 0.90 and median volume similarity score of ≥ 0.95. In the testing phase, the DL-CNN produced consensus segmentation masks with median Dice of 0.92 (IQR, 0.89–0.95), median volume similarity of 0.97 (IQR, 0.94–0.99), and median Hausdorff distance of 4.52 mm (IQR, 1.22–8.38). The detection model achieved an AUC of 0.98. Conclusion: The results from this single-institution study demonstrate the successful automation of lymph node segmentation for patients with HPV-OPC using a DL-CNN. Future studies, including validation with an external dataset, are necessary to clarify its role in the larger radiation oncology treatment planning workflow.http://www.sciencedirect.com/science/article/pii/S2405630822000520
spellingShingle Nicolette Taku
Kareem A. Wahid
Lisanne V. van Dijk
Jaakko Sahlsten
Joel Jaskari
Kimmo Kaski
Clifton D. Fuller
Mohamed A. Naser
Auto-detection and segmentation of involved lymph nodes in HPV-associated oropharyngeal cancer using a convolutional deep learning neural network
title Auto-detection and segmentation of involved lymph nodes in HPV-associated oropharyngeal cancer using a convolutional deep learning neural network
title_full Auto-detection and segmentation of involved lymph nodes in HPV-associated oropharyngeal cancer using a convolutional deep learning neural network
title_fullStr Auto-detection and segmentation of involved lymph nodes in HPV-associated oropharyngeal cancer using a convolutional deep learning neural network
title_full_unstemmed Auto-detection and segmentation of involved lymph nodes in HPV-associated oropharyngeal cancer using a convolutional deep learning neural network
title_short Auto-detection and segmentation of involved lymph nodes in HPV-associated oropharyngeal cancer using a convolutional deep learning neural network
title_sort auto detection and segmentation of involved lymph nodes in hpv associated oropharyngeal cancer using a convolutional deep learning neural network
url http://www.sciencedirect.com/science/article/pii/S2405630822000520
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