A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol.
Recent genome-wide association (GWA) studies described 95 loci controlling serum lipid levels. These common variants explain ∼25% of the heritability of the phenotypes. To date, no unbiased screen for gene-environment interactions for circulating lipids has been reported. We screened for variants th...
| 出版年: | PLoS Genetics |
|---|---|
| 主要な著者: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| フォーマット: | 論文 |
| 言語: | 英語 |
| 出版事項: |
Public Library of Science (PLoS)
2011-10-01
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| オンライン・アクセス: | https://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1002333&type=printable |
| _version_ | 1849453181807886336 |
|---|---|
| author | Ida Surakka Aaron Isaacs Lennart C Karssen Pirkka-Pekka P Laurila Rita P S Middelberg Emmi Tikkanen Janina S Ried Claudia Lamina Massimo Mangino Wilmar Igl Jouke-Jan Hottenga Vasiliki Lagou Pim van der Harst Irene Mateo Leach Tõnu Esko Zoltán Kutalik Nicholas W Wainwright Maksim V Struchalin Antti-Pekka Sarin Antti J Kangas Jorma S Viikari Markus Perola Taina Rantanen Ann-Kristin Petersen Pasi Soininen Asa Johansson Nicole Soranzo Andrew C Heath Theodore Papamarkou Inga Prokopenko Anke Tönjes Florian Kronenberg Angela Döring Fernando Rivadeneira Grant W Montgomery John B Whitfield Mika Kähönen Terho Lehtimäki Nelson B Freimer Gonneke Willemsen Eco J C de Geus Aarno Palotie Manj S Sandhu Dawn M Waterworth Andres Metspalu Michael Stumvoll André G Uitterlinden Antti Jula Gerjan Navis Cisca Wijmenga Bruce H R Wolffenbuttel Marja-Riitta Taskinen Mika Ala-Korpela Jaakko Kaprio Kirsten O Kyvik Dorret I Boomsma Nancy L Pedersen Ulf Gyllensten James F Wilson Igor Rudan Harry Campbell Peter P Pramstaller Tim D Spector Jacqueline C M Witteman Johan G Eriksson Veikko Salomaa Ben A Oostra Olli T Raitakari H-Erich Wichmann Christian Gieger Marjo-Riitta Järvelin Nicholas G Martin Albert Hofman Mark I McCarthy Leena Peltonen Cornelia M van Duijn Yurii S Aulchenko Samuli Ripatti ENGAGE Consortium |
| author_facet | Ida Surakka Aaron Isaacs Lennart C Karssen Pirkka-Pekka P Laurila Rita P S Middelberg Emmi Tikkanen Janina S Ried Claudia Lamina Massimo Mangino Wilmar Igl Jouke-Jan Hottenga Vasiliki Lagou Pim van der Harst Irene Mateo Leach Tõnu Esko Zoltán Kutalik Nicholas W Wainwright Maksim V Struchalin Antti-Pekka Sarin Antti J Kangas Jorma S Viikari Markus Perola Taina Rantanen Ann-Kristin Petersen Pasi Soininen Asa Johansson Nicole Soranzo Andrew C Heath Theodore Papamarkou Inga Prokopenko Anke Tönjes Florian Kronenberg Angela Döring Fernando Rivadeneira Grant W Montgomery John B Whitfield Mika Kähönen Terho Lehtimäki Nelson B Freimer Gonneke Willemsen Eco J C de Geus Aarno Palotie Manj S Sandhu Dawn M Waterworth Andres Metspalu Michael Stumvoll André G Uitterlinden Antti Jula Gerjan Navis Cisca Wijmenga Bruce H R Wolffenbuttel Marja-Riitta Taskinen Mika Ala-Korpela Jaakko Kaprio Kirsten O Kyvik Dorret I Boomsma Nancy L Pedersen Ulf Gyllensten James F Wilson Igor Rudan Harry Campbell Peter P Pramstaller Tim D Spector Jacqueline C M Witteman Johan G Eriksson Veikko Salomaa Ben A Oostra Olli T Raitakari H-Erich Wichmann Christian Gieger Marjo-Riitta Järvelin Nicholas G Martin Albert Hofman Mark I McCarthy Leena Peltonen Cornelia M van Duijn Yurii S Aulchenko Samuli Ripatti ENGAGE Consortium |
| author_sort | Ida Surakka |
| collection | DOAJ |
| container_title | PLoS Genetics |
| description | Recent genome-wide association (GWA) studies described 95 loci controlling serum lipid levels. These common variants explain ∼25% of the heritability of the phenotypes. To date, no unbiased screen for gene-environment interactions for circulating lipids has been reported. We screened for variants that modify the relationship between known epidemiological risk factors and circulating lipid levels in a meta-analysis of genome-wide association (GWA) data from 18 population-based cohorts with European ancestry (maximum N = 32,225). We collected 8 further cohorts (N = 17,102) for replication, and rs6448771 on 4p15 demonstrated genome-wide significant interaction with waist-to-hip-ratio (WHR) on total cholesterol (TC) with a combined P-value of 4.79×10(-9). There were two potential candidate genes in the region, PCDH7 and CCKAR, with differential expression levels for rs6448771 genotypes in adipose tissue. The effect of WHR on TC was strongest for individuals carrying two copies of G allele, for whom a one standard deviation (sd) difference in WHR corresponds to 0.19 sd difference in TC concentration, while for A allele homozygous the difference was 0.12 sd. Our findings may open up possibilities for targeted intervention strategies for people characterized by specific genomic profiles. However, more refined measures of both body-fat distribution and metabolic measures are needed to understand how their joint dynamics are modified by the newly found locus. |
| format | Article |
| id | doaj-art-b59698eee7fa4c7c9f51db92a8ffc2f7 |
| institution | Directory of Open Access Journals |
| issn | 1553-7390 1553-7404 |
| language | English |
| publishDate | 2011-10-01 |
| publisher | Public Library of Science (PLoS) |
| record_format | Article |
| spelling | doaj-art-b59698eee7fa4c7c9f51db92a8ffc2f72025-08-20T03:26:39ZengPublic Library of Science (PLoS)PLoS Genetics1553-73901553-74042011-10-01710e100233310.1371/journal.pgen.1002333A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol.Ida SurakkaAaron IsaacsLennart C KarssenPirkka-Pekka P LaurilaRita P S MiddelbergEmmi TikkanenJanina S RiedClaudia LaminaMassimo ManginoWilmar IglJouke-Jan HottengaVasiliki LagouPim van der HarstIrene Mateo LeachTõnu EskoZoltán KutalikNicholas W WainwrightMaksim V StruchalinAntti-Pekka SarinAntti J KangasJorma S ViikariMarkus PerolaTaina RantanenAnn-Kristin PetersenPasi SoininenAsa JohanssonNicole SoranzoAndrew C HeathTheodore PapamarkouInga ProkopenkoAnke TönjesFlorian KronenbergAngela DöringFernando RivadeneiraGrant W MontgomeryJohn B WhitfieldMika KähönenTerho LehtimäkiNelson B FreimerGonneke WillemsenEco J C de GeusAarno PalotieManj S SandhuDawn M WaterworthAndres MetspaluMichael StumvollAndré G UitterlindenAntti JulaGerjan NavisCisca WijmengaBruce H R WolffenbuttelMarja-Riitta TaskinenMika Ala-KorpelaJaakko KaprioKirsten O KyvikDorret I BoomsmaNancy L PedersenUlf GyllenstenJames F WilsonIgor RudanHarry CampbellPeter P PramstallerTim D SpectorJacqueline C M WittemanJohan G ErikssonVeikko SalomaaBen A OostraOlli T RaitakariH-Erich WichmannChristian GiegerMarjo-Riitta JärvelinNicholas G MartinAlbert HofmanMark I McCarthyLeena PeltonenCornelia M van DuijnYurii S AulchenkoSamuli RipattiENGAGE ConsortiumRecent genome-wide association (GWA) studies described 95 loci controlling serum lipid levels. These common variants explain ∼25% of the heritability of the phenotypes. To date, no unbiased screen for gene-environment interactions for circulating lipids has been reported. We screened for variants that modify the relationship between known epidemiological risk factors and circulating lipid levels in a meta-analysis of genome-wide association (GWA) data from 18 population-based cohorts with European ancestry (maximum N = 32,225). We collected 8 further cohorts (N = 17,102) for replication, and rs6448771 on 4p15 demonstrated genome-wide significant interaction with waist-to-hip-ratio (WHR) on total cholesterol (TC) with a combined P-value of 4.79×10(-9). There were two potential candidate genes in the region, PCDH7 and CCKAR, with differential expression levels for rs6448771 genotypes in adipose tissue. The effect of WHR on TC was strongest for individuals carrying two copies of G allele, for whom a one standard deviation (sd) difference in WHR corresponds to 0.19 sd difference in TC concentration, while for A allele homozygous the difference was 0.12 sd. Our findings may open up possibilities for targeted intervention strategies for people characterized by specific genomic profiles. However, more refined measures of both body-fat distribution and metabolic measures are needed to understand how their joint dynamics are modified by the newly found locus.https://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1002333&type=printable |
| spellingShingle | Ida Surakka Aaron Isaacs Lennart C Karssen Pirkka-Pekka P Laurila Rita P S Middelberg Emmi Tikkanen Janina S Ried Claudia Lamina Massimo Mangino Wilmar Igl Jouke-Jan Hottenga Vasiliki Lagou Pim van der Harst Irene Mateo Leach Tõnu Esko Zoltán Kutalik Nicholas W Wainwright Maksim V Struchalin Antti-Pekka Sarin Antti J Kangas Jorma S Viikari Markus Perola Taina Rantanen Ann-Kristin Petersen Pasi Soininen Asa Johansson Nicole Soranzo Andrew C Heath Theodore Papamarkou Inga Prokopenko Anke Tönjes Florian Kronenberg Angela Döring Fernando Rivadeneira Grant W Montgomery John B Whitfield Mika Kähönen Terho Lehtimäki Nelson B Freimer Gonneke Willemsen Eco J C de Geus Aarno Palotie Manj S Sandhu Dawn M Waterworth Andres Metspalu Michael Stumvoll André G Uitterlinden Antti Jula Gerjan Navis Cisca Wijmenga Bruce H R Wolffenbuttel Marja-Riitta Taskinen Mika Ala-Korpela Jaakko Kaprio Kirsten O Kyvik Dorret I Boomsma Nancy L Pedersen Ulf Gyllensten James F Wilson Igor Rudan Harry Campbell Peter P Pramstaller Tim D Spector Jacqueline C M Witteman Johan G Eriksson Veikko Salomaa Ben A Oostra Olli T Raitakari H-Erich Wichmann Christian Gieger Marjo-Riitta Järvelin Nicholas G Martin Albert Hofman Mark I McCarthy Leena Peltonen Cornelia M van Duijn Yurii S Aulchenko Samuli Ripatti ENGAGE Consortium A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol. |
| title | A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol. |
| title_full | A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol. |
| title_fullStr | A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol. |
| title_full_unstemmed | A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol. |
| title_short | A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol. |
| title_sort | genome wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist to hip ratio on total cholesterol |
| url | https://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1002333&type=printable |
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michaelstumvoll genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT andreguitterlinden genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT anttijula genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT gerjannavis genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT ciscawijmenga genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT brucehrwolffenbuttel genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT marjariittataskinen genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT mikaalakorpela genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT jaakkokaprio genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT kirstenokyvik genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT dorretiboomsma genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT nancylpedersen genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT ulfgyllensten genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT jamesfwilson genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT igorrudan genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT harrycampbell genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT peterppramstaller genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT timdspector genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT jacquelinecmwitteman genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT johangeriksson genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT veikkosalomaa genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT benaoostra genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT ollitraitakari genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT herichwichmann genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT christiangieger genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT marjoriittajarvelin genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT nicholasgmartin genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT alberthofman genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT markimccarthy genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT leenapeltonen genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT corneliamvanduijn genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT yuriisaulchenko genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT samuliripatti genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol AT engageconsortium genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol |
