A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol.

Recent genome-wide association (GWA) studies described 95 loci controlling serum lipid levels. These common variants explain ∼25% of the heritability of the phenotypes. To date, no unbiased screen for gene-environment interactions for circulating lipids has been reported. We screened for variants th...

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出版年:PLoS Genetics
主要な著者: Ida Surakka, Aaron Isaacs, Lennart C Karssen, Pirkka-Pekka P Laurila, Rita P S Middelberg, Emmi Tikkanen, Janina S Ried, Claudia Lamina, Massimo Mangino, Wilmar Igl, Jouke-Jan Hottenga, Vasiliki Lagou, Pim van der Harst, Irene Mateo Leach, Tõnu Esko, Zoltán Kutalik, Nicholas W Wainwright, Maksim V Struchalin, Antti-Pekka Sarin, Antti J Kangas, Jorma S Viikari, Markus Perola, Taina Rantanen, Ann-Kristin Petersen, Pasi Soininen, Asa Johansson, Nicole Soranzo, Andrew C Heath, Theodore Papamarkou, Inga Prokopenko, Anke Tönjes, Florian Kronenberg, Angela Döring, Fernando Rivadeneira, Grant W Montgomery, John B Whitfield, Mika Kähönen, Terho Lehtimäki, Nelson B Freimer, Gonneke Willemsen, Eco J C de Geus, Aarno Palotie, Manj S Sandhu, Dawn M Waterworth, Andres Metspalu, Michael Stumvoll, André G Uitterlinden, Antti Jula, Gerjan Navis, Cisca Wijmenga, Bruce H R Wolffenbuttel, Marja-Riitta Taskinen, Mika Ala-Korpela, Jaakko Kaprio, Kirsten O Kyvik, Dorret I Boomsma, Nancy L Pedersen, Ulf Gyllensten, James F Wilson, Igor Rudan, Harry Campbell, Peter P Pramstaller, Tim D Spector, Jacqueline C M Witteman, Johan G Eriksson, Veikko Salomaa, Ben A Oostra, Olli T Raitakari, H-Erich Wichmann, Christian Gieger, Marjo-Riitta Järvelin, Nicholas G Martin, Albert Hofman, Mark I McCarthy, Leena Peltonen, Cornelia M van Duijn, Yurii S Aulchenko, Samuli Ripatti, ENGAGE Consortium
フォーマット: 論文
言語:英語
出版事項: Public Library of Science (PLoS) 2011-10-01
オンライン・アクセス:https://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1002333&type=printable
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author Ida Surakka
Aaron Isaacs
Lennart C Karssen
Pirkka-Pekka P Laurila
Rita P S Middelberg
Emmi Tikkanen
Janina S Ried
Claudia Lamina
Massimo Mangino
Wilmar Igl
Jouke-Jan Hottenga
Vasiliki Lagou
Pim van der Harst
Irene Mateo Leach
Tõnu Esko
Zoltán Kutalik
Nicholas W Wainwright
Maksim V Struchalin
Antti-Pekka Sarin
Antti J Kangas
Jorma S Viikari
Markus Perola
Taina Rantanen
Ann-Kristin Petersen
Pasi Soininen
Asa Johansson
Nicole Soranzo
Andrew C Heath
Theodore Papamarkou
Inga Prokopenko
Anke Tönjes
Florian Kronenberg
Angela Döring
Fernando Rivadeneira
Grant W Montgomery
John B Whitfield
Mika Kähönen
Terho Lehtimäki
Nelson B Freimer
Gonneke Willemsen
Eco J C de Geus
Aarno Palotie
Manj S Sandhu
Dawn M Waterworth
Andres Metspalu
Michael Stumvoll
André G Uitterlinden
Antti Jula
Gerjan Navis
Cisca Wijmenga
Bruce H R Wolffenbuttel
Marja-Riitta Taskinen
Mika Ala-Korpela
Jaakko Kaprio
Kirsten O Kyvik
Dorret I Boomsma
Nancy L Pedersen
Ulf Gyllensten
James F Wilson
Igor Rudan
Harry Campbell
Peter P Pramstaller
Tim D Spector
Jacqueline C M Witteman
Johan G Eriksson
Veikko Salomaa
Ben A Oostra
Olli T Raitakari
H-Erich Wichmann
Christian Gieger
Marjo-Riitta Järvelin
Nicholas G Martin
Albert Hofman
Mark I McCarthy
Leena Peltonen
Cornelia M van Duijn
Yurii S Aulchenko
Samuli Ripatti
ENGAGE Consortium
author_facet Ida Surakka
Aaron Isaacs
Lennart C Karssen
Pirkka-Pekka P Laurila
Rita P S Middelberg
Emmi Tikkanen
Janina S Ried
Claudia Lamina
Massimo Mangino
Wilmar Igl
Jouke-Jan Hottenga
Vasiliki Lagou
Pim van der Harst
Irene Mateo Leach
Tõnu Esko
Zoltán Kutalik
Nicholas W Wainwright
Maksim V Struchalin
Antti-Pekka Sarin
Antti J Kangas
Jorma S Viikari
Markus Perola
Taina Rantanen
Ann-Kristin Petersen
Pasi Soininen
Asa Johansson
Nicole Soranzo
Andrew C Heath
Theodore Papamarkou
Inga Prokopenko
Anke Tönjes
Florian Kronenberg
Angela Döring
Fernando Rivadeneira
Grant W Montgomery
John B Whitfield
Mika Kähönen
Terho Lehtimäki
Nelson B Freimer
Gonneke Willemsen
Eco J C de Geus
Aarno Palotie
Manj S Sandhu
Dawn M Waterworth
Andres Metspalu
Michael Stumvoll
André G Uitterlinden
Antti Jula
Gerjan Navis
Cisca Wijmenga
Bruce H R Wolffenbuttel
Marja-Riitta Taskinen
Mika Ala-Korpela
Jaakko Kaprio
Kirsten O Kyvik
Dorret I Boomsma
Nancy L Pedersen
Ulf Gyllensten
James F Wilson
Igor Rudan
Harry Campbell
Peter P Pramstaller
Tim D Spector
Jacqueline C M Witteman
Johan G Eriksson
Veikko Salomaa
Ben A Oostra
Olli T Raitakari
H-Erich Wichmann
Christian Gieger
Marjo-Riitta Järvelin
Nicholas G Martin
Albert Hofman
Mark I McCarthy
Leena Peltonen
Cornelia M van Duijn
Yurii S Aulchenko
Samuli Ripatti
ENGAGE Consortium
author_sort Ida Surakka
collection DOAJ
container_title PLoS Genetics
description Recent genome-wide association (GWA) studies described 95 loci controlling serum lipid levels. These common variants explain ∼25% of the heritability of the phenotypes. To date, no unbiased screen for gene-environment interactions for circulating lipids has been reported. We screened for variants that modify the relationship between known epidemiological risk factors and circulating lipid levels in a meta-analysis of genome-wide association (GWA) data from 18 population-based cohorts with European ancestry (maximum N = 32,225). We collected 8 further cohorts (N = 17,102) for replication, and rs6448771 on 4p15 demonstrated genome-wide significant interaction with waist-to-hip-ratio (WHR) on total cholesterol (TC) with a combined P-value of 4.79×10(-9). There were two potential candidate genes in the region, PCDH7 and CCKAR, with differential expression levels for rs6448771 genotypes in adipose tissue. The effect of WHR on TC was strongest for individuals carrying two copies of G allele, for whom a one standard deviation (sd) difference in WHR corresponds to 0.19 sd difference in TC concentration, while for A allele homozygous the difference was 0.12 sd. Our findings may open up possibilities for targeted intervention strategies for people characterized by specific genomic profiles. However, more refined measures of both body-fat distribution and metabolic measures are needed to understand how their joint dynamics are modified by the newly found locus.
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spelling doaj-art-b59698eee7fa4c7c9f51db92a8ffc2f72025-08-20T03:26:39ZengPublic Library of Science (PLoS)PLoS Genetics1553-73901553-74042011-10-01710e100233310.1371/journal.pgen.1002333A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol.Ida SurakkaAaron IsaacsLennart C KarssenPirkka-Pekka P LaurilaRita P S MiddelbergEmmi TikkanenJanina S RiedClaudia LaminaMassimo ManginoWilmar IglJouke-Jan HottengaVasiliki LagouPim van der HarstIrene Mateo LeachTõnu EskoZoltán KutalikNicholas W WainwrightMaksim V StruchalinAntti-Pekka SarinAntti J KangasJorma S ViikariMarkus PerolaTaina RantanenAnn-Kristin PetersenPasi SoininenAsa JohanssonNicole SoranzoAndrew C HeathTheodore PapamarkouInga ProkopenkoAnke TönjesFlorian KronenbergAngela DöringFernando RivadeneiraGrant W MontgomeryJohn B WhitfieldMika KähönenTerho LehtimäkiNelson B FreimerGonneke WillemsenEco J C de GeusAarno PalotieManj S SandhuDawn M WaterworthAndres MetspaluMichael StumvollAndré G UitterlindenAntti JulaGerjan NavisCisca WijmengaBruce H R WolffenbuttelMarja-Riitta TaskinenMika Ala-KorpelaJaakko KaprioKirsten O KyvikDorret I BoomsmaNancy L PedersenUlf GyllenstenJames F WilsonIgor RudanHarry CampbellPeter P PramstallerTim D SpectorJacqueline C M WittemanJohan G ErikssonVeikko SalomaaBen A OostraOlli T RaitakariH-Erich WichmannChristian GiegerMarjo-Riitta JärvelinNicholas G MartinAlbert HofmanMark I McCarthyLeena PeltonenCornelia M van DuijnYurii S AulchenkoSamuli RipattiENGAGE ConsortiumRecent genome-wide association (GWA) studies described 95 loci controlling serum lipid levels. These common variants explain ∼25% of the heritability of the phenotypes. To date, no unbiased screen for gene-environment interactions for circulating lipids has been reported. We screened for variants that modify the relationship between known epidemiological risk factors and circulating lipid levels in a meta-analysis of genome-wide association (GWA) data from 18 population-based cohorts with European ancestry (maximum N = 32,225). We collected 8 further cohorts (N = 17,102) for replication, and rs6448771 on 4p15 demonstrated genome-wide significant interaction with waist-to-hip-ratio (WHR) on total cholesterol (TC) with a combined P-value of 4.79×10(-9). There were two potential candidate genes in the region, PCDH7 and CCKAR, with differential expression levels for rs6448771 genotypes in adipose tissue. The effect of WHR on TC was strongest for individuals carrying two copies of G allele, for whom a one standard deviation (sd) difference in WHR corresponds to 0.19 sd difference in TC concentration, while for A allele homozygous the difference was 0.12 sd. Our findings may open up possibilities for targeted intervention strategies for people characterized by specific genomic profiles. However, more refined measures of both body-fat distribution and metabolic measures are needed to understand how their joint dynamics are modified by the newly found locus.https://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1002333&type=printable
spellingShingle Ida Surakka
Aaron Isaacs
Lennart C Karssen
Pirkka-Pekka P Laurila
Rita P S Middelberg
Emmi Tikkanen
Janina S Ried
Claudia Lamina
Massimo Mangino
Wilmar Igl
Jouke-Jan Hottenga
Vasiliki Lagou
Pim van der Harst
Irene Mateo Leach
Tõnu Esko
Zoltán Kutalik
Nicholas W Wainwright
Maksim V Struchalin
Antti-Pekka Sarin
Antti J Kangas
Jorma S Viikari
Markus Perola
Taina Rantanen
Ann-Kristin Petersen
Pasi Soininen
Asa Johansson
Nicole Soranzo
Andrew C Heath
Theodore Papamarkou
Inga Prokopenko
Anke Tönjes
Florian Kronenberg
Angela Döring
Fernando Rivadeneira
Grant W Montgomery
John B Whitfield
Mika Kähönen
Terho Lehtimäki
Nelson B Freimer
Gonneke Willemsen
Eco J C de Geus
Aarno Palotie
Manj S Sandhu
Dawn M Waterworth
Andres Metspalu
Michael Stumvoll
André G Uitterlinden
Antti Jula
Gerjan Navis
Cisca Wijmenga
Bruce H R Wolffenbuttel
Marja-Riitta Taskinen
Mika Ala-Korpela
Jaakko Kaprio
Kirsten O Kyvik
Dorret I Boomsma
Nancy L Pedersen
Ulf Gyllensten
James F Wilson
Igor Rudan
Harry Campbell
Peter P Pramstaller
Tim D Spector
Jacqueline C M Witteman
Johan G Eriksson
Veikko Salomaa
Ben A Oostra
Olli T Raitakari
H-Erich Wichmann
Christian Gieger
Marjo-Riitta Järvelin
Nicholas G Martin
Albert Hofman
Mark I McCarthy
Leena Peltonen
Cornelia M van Duijn
Yurii S Aulchenko
Samuli Ripatti
ENGAGE Consortium
A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol.
title A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol.
title_full A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol.
title_fullStr A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol.
title_full_unstemmed A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol.
title_short A genome-wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist-to-hip ratio on total cholesterol.
title_sort genome wide screen for interactions reveals a new locus on 4p15 modifying the effect of waist to hip ratio on total cholesterol
url https://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1002333&type=printable
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AT zoltankutalik genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT nicholaswwainwright genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT maksimvstruchalin genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT anttipekkasarin genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT anttijkangas genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT jormasviikari genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT markusperola genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT tainarantanen genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT annkristinpetersen genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT pasisoininen genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT asajohansson genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT nicolesoranzo genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT andrewcheath genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT theodorepapamarkou genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT ingaprokopenko genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT anketonjes genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT floriankronenberg genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT angeladoring genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT fernandorivadeneira genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT grantwmontgomery genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT johnbwhitfield genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT mikakahonen genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT terholehtimaki genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT nelsonbfreimer genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT gonnekewillemsen genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT ecojcdegeus genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT aarnopalotie genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT manjssandhu genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT dawnmwaterworth genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT andresmetspalu genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT michaelstumvoll genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT andreguitterlinden genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT anttijula genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT gerjannavis genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT ciscawijmenga genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT brucehrwolffenbuttel genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT marjariittataskinen genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT mikaalakorpela genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT jaakkokaprio genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT kirstenokyvik genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT dorretiboomsma genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT nancylpedersen genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT ulfgyllensten genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT jamesfwilson genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT igorrudan genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT harrycampbell genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT peterppramstaller genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT timdspector genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT jacquelinecmwitteman genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT johangeriksson genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT veikkosalomaa genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT benaoostra genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT ollitraitakari genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT herichwichmann genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT christiangieger genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT marjoriittajarvelin genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT nicholasgmartin genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT alberthofman genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT markimccarthy genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT leenapeltonen genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT corneliamvanduijn genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT yuriisaulchenko genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT samuliripatti genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol
AT engageconsortium genomewidescreenforinteractionsrevealsanewlocuson4p15modifyingtheeffectofwaisttohipratioontotalcholesterol