Structural modeling of ion channels using AlphaFold2, RoseTTAFold2, and ESMFold
Ion channels play key roles in human physiology and are important targets in drug discovery. The atomic-scale structures of ion channels provide invaluable insights into a fundamental understanding of the molecular mechanisms of channel gating and modulation. Recent breakthroughs in deep learning-ba...
| Published in: | Channels |
|---|---|
| Main Authors: | Phuong Tran Nguyen, Brandon John Harris, Diego Lopez Mateos, Adriana Hernández González, Adam Michael Murray, Vladimir Yarov-Yarovoy |
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2024-12-01
|
| Subjects: | |
| Online Access: | https://www.tandfonline.com/doi/10.1080/19336950.2024.2325032 |
Similar Items
Prediction of the Iron–Sulfur Binding Sites in Proteins Using the Highly Accurate Three-Dimensional Models Calculated by AlphaFold and RoseTTAFold
by: Béatrice Golinelli-Pimpaneau
Published: (2021-12-01)
by: Béatrice Golinelli-Pimpaneau
Published: (2021-12-01)
Harnessing AlphaFold to reveal hERG channel conformational state secrets
by: Khoa Ngo, et al.
Published: (2025-07-01)
by: Khoa Ngo, et al.
Published: (2025-07-01)
Structural prediction of GluN3 NMDA receptors
by: Yunsheng Liu, et al.
Published: (2024-08-01)
by: Yunsheng Liu, et al.
Published: (2024-08-01)
Artificial Intelligence: A New Tool for Structure-Based G Protein-Coupled Receptor Drug Discovery
by: Jason Chung, et al.
Published: (2025-03-01)
by: Jason Chung, et al.
Published: (2025-03-01)
Artificial intelligence in fusion protein three‐dimensional structure prediction: Review and perspective
by: Himansu Kumar, et al.
Published: (2024-08-01)
by: Himansu Kumar, et al.
Published: (2024-08-01)
Assessment of AI-Based Protein Structure Prediction for the NLRP3 Target
by: Jian Yin, et al.
Published: (2022-09-01)
by: Jian Yin, et al.
Published: (2022-09-01)
Expert Consensus on Ion Channel Drugs for Chronic Pain Treatment in China
by: Ma K, et al.
Published: (2024-03-01)
by: Ma K, et al.
Published: (2024-03-01)
Hydrophobic Drug/Toxin Binding Sites in Voltage-Dependent K+ and Na+ Channels
by: Kenny M. Van Theemsche, et al.
Published: (2020-05-01)
by: Kenny M. Van Theemsche, et al.
Published: (2020-05-01)
Inhibitory effects of linalool, an essential oil component of lavender, on nociceptive TRPA1 and voltage-gated Ca2+ channels in mouse sensory neurons
by: Miho Hashimoto, et al.
Published: (2023-07-01)
by: Miho Hashimoto, et al.
Published: (2023-07-01)
Phosphatidic acid modulation of Kv channel voltage sensor function
by: Richard K Hite, et al.
Published: (2014-10-01)
by: Richard K Hite, et al.
Published: (2014-10-01)
Historical Perspective of the Characterization of Conotoxins Targeting Voltage-Gated Sodium Channels
by: James R. Groome
Published: (2023-03-01)
by: James R. Groome
Published: (2023-03-01)
Peptide Toxins from Marine <i>Conus</i> Snails with Activity on Potassium Channels and/or Currents
by: Luis Martínez-Hernández, et al.
Published: (2024-11-01)
by: Luis Martínez-Hernández, et al.
Published: (2024-11-01)
Abstract P-10: Comparison of Ion Coordination in Similar Selectivity Filters of Bacterial Sodium and Eukaryotic Calcium Voltage-Gated Channels
by: Ivan N. Terterov, et al.
Published: (2019-06-01)
by: Ivan N. Terterov, et al.
Published: (2019-06-01)
Sculpting ion channel functional expression with engineered ubiquitin ligases
by: Scott A Kanner, et al.
Published: (2017-12-01)
by: Scott A Kanner, et al.
Published: (2017-12-01)
Ciguatoxins: Cyclic Polyether Modulators of Voltage-gated Iion Channel Function
by: Richard J. Lewis, et al.
Published: (2006-04-01)
by: Richard J. Lewis, et al.
Published: (2006-04-01)
Research progress in ion channel mechanism of morphine addiction
by: CHEN Xia*, WANG Yong, WEI Yiyong
Published: (2024-04-01)
by: CHEN Xia*, WANG Yong, WEI Yiyong
Published: (2024-04-01)
Comparison of Fitting Current–Voltage Characteristics Curves of FinFET Transistors with Various Fixed Parameters
by: Hsin-Chia Yang, et al.
Published: (2022-10-01)
by: Hsin-Chia Yang, et al.
Published: (2022-10-01)
Marine Toxins Targeting Ion Channels
by: Hugo R. Arias
Published: (2006-04-01)
by: Hugo R. Arias
Published: (2006-04-01)
Graded Ca2+/calmodulin-dependent coupling of voltage-gated CaV1.2 channels
by: Rose E Dixon, et al.
Published: (2015-02-01)
by: Rose E Dixon, et al.
Published: (2015-02-01)
Sensitive Detection of Ciguatoxins Using a Neuroblastoma Cell-Based Assay with Voltage-Gated Potassium Channel Inhibitors
by: Toshiaki Yokozeki, et al.
Published: (2024-02-01)
by: Toshiaki Yokozeki, et al.
Published: (2024-02-01)
Pyrethroids in an AlphaFold2 Model of the Insect Sodium Channel
by: Boris S. Zhorov, et al.
Published: (2022-08-01)
by: Boris S. Zhorov, et al.
Published: (2022-08-01)
Biochemistry and physiology of voltage-gated calcium channel trafficking: a target for gabapentinoid drugs
by: Annette C. Dolphin
Published: (2025-07-01)
by: Annette C. Dolphin
Published: (2025-07-01)
Detection of the role of voltage-gated sodium channels in the mechanism of anticonvulsant action of Gabapentin in chicks (in-vivo)
by: Rawnaq Faris Al-Shalchi, et al.
Published: (2019-12-01)
by: Rawnaq Faris Al-Shalchi, et al.
Published: (2019-12-01)
An examination of plasma autoantibodies against voltage gated calcium channels in schizophrenia
by: Ryan Thomas McLean, et al.
Published: (2023-03-01)
by: Ryan Thomas McLean, et al.
Published: (2023-03-01)
Heterogeneity and Remodeling of Ion Currents in Cultured Right Atrial Fibroblasts From Patients With Sinus Rhythm or Atrial Fibrillation
by: Dorothee Jakob, et al.
Published: (2021-06-01)
by: Dorothee Jakob, et al.
Published: (2021-06-01)
Veratridine-Induced Oscillations in Nav 1.7 but Not Nav 1.5 Sodium Channels Are Revealed by Membrane Potential Sensitive Dye
by: Sarah C. R. Lummis, et al.
Published: (2025-03-01)
by: Sarah C. R. Lummis, et al.
Published: (2025-03-01)
Regulation of K<sup>+</sup> Conductance by a Hydrogen Bond in Kv2.1, Kv2.2, and Kv1.2 Channels
by: Yuchen Zhang, et al.
Published: (2021-03-01)
by: Yuchen Zhang, et al.
Published: (2021-03-01)
Molecular mechanisms underlying pimaric acid-induced modulation of voltage-gated K+ channels
by: Kazuho Sakamoto, et al.
Published: (2017-04-01)
by: Kazuho Sakamoto, et al.
Published: (2017-04-01)
Comparison, Analysis, and Molecular Dynamics Simulations of Structures of a Viral Protein Modeled Using Various Computational Tools
by: Hemalatha Mani, et al.
Published: (2023-08-01)
by: Hemalatha Mani, et al.
Published: (2023-08-01)
Purification and Characterization of a Novel Insecticidal Toxin, μ-sparatoxin-Hv2, from the Venom of the Spider Heteropoda venatoria
by: Zhen Xiao, et al.
Published: (2018-06-01)
by: Zhen Xiao, et al.
Published: (2018-06-01)
Role of High Voltage-Gated Ca<sup>2+</sup> Channel Subunits in Pancreatic β-Cell Insulin Release. From Structure to Function
by: Petronel Tuluc, et al.
Published: (2021-08-01)
by: Petronel Tuluc, et al.
Published: (2021-08-01)
Voltage-Gated Potassium Channel Antibodies is a Sign of Limbic Encephalitis
by: Aylin BİCAN DEMİR, et al.
Published: (2016-01-01)
by: Aylin BİCAN DEMİR, et al.
Published: (2016-01-01)
Alantolactone mitigates the elevation of blood pressure in mice induced by angiotensin II by inhibiting calcium channel activation
by: Ruqiang Yuan, et al.
Published: (2025-01-01)
by: Ruqiang Yuan, et al.
Published: (2025-01-01)
Voltage gated potassium channel antibodies positive autoimmune encephalopathy in a child: A case report and literature review of an under-recognized condition
by: Subramanian Ganesan, et al.
Published: (2013-01-01)
by: Subramanian Ganesan, et al.
Published: (2013-01-01)
Predictive QSAR model confirms flavonoids in Chinese medicine can activate voltage-gated calcium (CaV) channel in osteogenesis
by: Ki Chan, et al.
Published: (2020-03-01)
by: Ki Chan, et al.
Published: (2020-03-01)
Structure and physiological function of the human KCNQ1 channel voltage sensor intermediate state
by: Keenan C Taylor, et al.
Published: (2020-02-01)
by: Keenan C Taylor, et al.
Published: (2020-02-01)
Regulation of pain neurotransmitters and chondrocytes metabolism mediated by voltage-gated ion channels: A narrative review
by: Xinwei Wang, et al.
Published: (2023-07-01)
by: Xinwei Wang, et al.
Published: (2023-07-01)
Blocking L-type Voltage-Gated Calcium Ion Channels Changes the Intensity of Protein Synthesis in Metanephric Cells
by: Yelena Yu. Shapovalova, et al.
Published: (2019-06-01)
by: Yelena Yu. Shapovalova, et al.
Published: (2019-06-01)
Commentary: A channelopathy mutation in the voltage-sensor discloses contributions of a conserved phenylalanine to gating properties of Kv1.1 channels and ataxia
by: Sonia Hasan, et al.
Published: (2018-06-01)
by: Sonia Hasan, et al.
Published: (2018-06-01)
An all-atom model of the human cardiac sodium channel in a lipid bilayer
by: Garrett M. Knotts, et al.
Published: (2024-11-01)
by: Garrett M. Knotts, et al.
Published: (2024-11-01)
Similar Items
-
Prediction of the Iron–Sulfur Binding Sites in Proteins Using the Highly Accurate Three-Dimensional Models Calculated by AlphaFold and RoseTTAFold
by: Béatrice Golinelli-Pimpaneau
Published: (2021-12-01) -
Harnessing AlphaFold to reveal hERG channel conformational state secrets
by: Khoa Ngo, et al.
Published: (2025-07-01) -
Structural prediction of GluN3 NMDA receptors
by: Yunsheng Liu, et al.
Published: (2024-08-01) -
Artificial Intelligence: A New Tool for Structure-Based G Protein-Coupled Receptor Drug Discovery
by: Jason Chung, et al.
Published: (2025-03-01) -
Artificial intelligence in fusion protein three‐dimensional structure prediction: Review and perspective
by: Himansu Kumar, et al.
Published: (2024-08-01)
