Ethnic and region-specific genetic risk variants of stroke and its comorbid conditions can define the variations in the burden of stroke and its phenotypic traits
Burden of stroke differs by region, which could be attributed to differences in comorbid conditions and ethnicity. Genomewide variation acts as a proxy marker for ethnicity, and comorbid conditions. We present an integrated approach to understand this variation by considering prevalence and mortalit...
| Published in: | eLife |
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| Main Authors: | , , |
| Format: | Article |
| Language: | English |
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eLife Sciences Publications Ltd
2024-09-01
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| Online Access: | https://elifesciences.org/articles/94088 |
| _version_ | 1850068487281573888 |
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| author | Rashmi Sukumaran Achuthsankar S Nair Moinak Banerjee |
| author_facet | Rashmi Sukumaran Achuthsankar S Nair Moinak Banerjee |
| author_sort | Rashmi Sukumaran |
| collection | DOAJ |
| container_title | eLife |
| description | Burden of stroke differs by region, which could be attributed to differences in comorbid conditions and ethnicity. Genomewide variation acts as a proxy marker for ethnicity, and comorbid conditions. We present an integrated approach to understand this variation by considering prevalence and mortality rates of stroke and its comorbid risk for 204 countries from 2009 to 2019, and Genome-wide association studies (GWAS) risk variant for all these conditions. Global and regional trend analysis of rates using linear regression, correlation, and proportion analysis, signifies ethnogeographic differences. Interestingly, the comorbid conditions that act as risk drivers for stroke differed by regions, with more of metabolic risk in America and Europe, in contrast to high systolic blood pressure in Asian and African regions. GWAS risk loci of stroke and its comorbid conditions indicate distinct population stratification for each of these conditions, signifying for population-specific risk. Unique and shared genetic risk variants for stroke, and its comorbid and followed up with ethnic-specific variation can help in determining regional risk drivers for stroke. Unique ethnic-specific risk variants and their distinct patterns of linkage disequilibrium further uncover the drivers for phenotypic variation. Therefore, identifying population- and comorbidity-specific risk variants might help in defining the threshold for risk, and aid in developing population-specific prevention strategies for stroke. |
| format | Article |
| id | doaj-art-c5e45782a2ad4116a39b4d272b4eaa99 |
| institution | Directory of Open Access Journals |
| issn | 2050-084X |
| language | English |
| publishDate | 2024-09-01 |
| publisher | eLife Sciences Publications Ltd |
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| spelling | doaj-art-c5e45782a2ad4116a39b4d272b4eaa992025-08-20T00:18:23ZengeLife Sciences Publications LtdeLife2050-084X2024-09-011310.7554/eLife.94088Ethnic and region-specific genetic risk variants of stroke and its comorbid conditions can define the variations in the burden of stroke and its phenotypic traitsRashmi Sukumaran0https://orcid.org/0000-0002-7951-3495Achuthsankar S Nair1Moinak Banerjee2https://orcid.org/0000-0002-0842-0398Human Molecular Genetics Laboratory, Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram, India; Department of Computational Biology and Bioinformatics, University of Kerala, Thiruvananthapuram, IndiaDepartment of Computational Biology and Bioinformatics, University of Kerala, Thiruvananthapuram, IndiaHuman Molecular Genetics Laboratory, Rajiv Gandhi Centre for Biotechnology, Thiruvananthapuram, IndiaBurden of stroke differs by region, which could be attributed to differences in comorbid conditions and ethnicity. Genomewide variation acts as a proxy marker for ethnicity, and comorbid conditions. We present an integrated approach to understand this variation by considering prevalence and mortality rates of stroke and its comorbid risk for 204 countries from 2009 to 2019, and Genome-wide association studies (GWAS) risk variant for all these conditions. Global and regional trend analysis of rates using linear regression, correlation, and proportion analysis, signifies ethnogeographic differences. Interestingly, the comorbid conditions that act as risk drivers for stroke differed by regions, with more of metabolic risk in America and Europe, in contrast to high systolic blood pressure in Asian and African regions. GWAS risk loci of stroke and its comorbid conditions indicate distinct population stratification for each of these conditions, signifying for population-specific risk. Unique and shared genetic risk variants for stroke, and its comorbid and followed up with ethnic-specific variation can help in determining regional risk drivers for stroke. Unique ethnic-specific risk variants and their distinct patterns of linkage disequilibrium further uncover the drivers for phenotypic variation. Therefore, identifying population- and comorbidity-specific risk variants might help in defining the threshold for risk, and aid in developing population-specific prevention strategies for stroke.https://elifesciences.org/articles/94088strokecomorbiditygeneticshypertensiondiabetespublic health |
| spellingShingle | Rashmi Sukumaran Achuthsankar S Nair Moinak Banerjee Ethnic and region-specific genetic risk variants of stroke and its comorbid conditions can define the variations in the burden of stroke and its phenotypic traits stroke comorbidity genetics hypertension diabetes public health |
| title | Ethnic and region-specific genetic risk variants of stroke and its comorbid conditions can define the variations in the burden of stroke and its phenotypic traits |
| title_full | Ethnic and region-specific genetic risk variants of stroke and its comorbid conditions can define the variations in the burden of stroke and its phenotypic traits |
| title_fullStr | Ethnic and region-specific genetic risk variants of stroke and its comorbid conditions can define the variations in the burden of stroke and its phenotypic traits |
| title_full_unstemmed | Ethnic and region-specific genetic risk variants of stroke and its comorbid conditions can define the variations in the burden of stroke and its phenotypic traits |
| title_short | Ethnic and region-specific genetic risk variants of stroke and its comorbid conditions can define the variations in the burden of stroke and its phenotypic traits |
| title_sort | ethnic and region specific genetic risk variants of stroke and its comorbid conditions can define the variations in the burden of stroke and its phenotypic traits |
| topic | stroke comorbidity genetics hypertension diabetes public health |
| url | https://elifesciences.org/articles/94088 |
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