ATAC-Seq Identifies Chromatin Landscapes Linked to the Regulation of Oxidative Stress in the Human Fungal Pathogen <i>Candida albicans</i>

Human fungal pathogens often encounter fungicidal stress upon host invasion, but they can swiftly adapt by transcriptional reprogramming that enables pathogen survival. Fungal immune evasion is tightly connected to chromatin regulation. Hence, fungal chromatin modifiers pose alternative treatment op...

Full description

Bibliographic Details
Published in:	Journal of Fungi
Main Authors:	Sabrina Jenull, Michael Tscherner, Theresia Mair, Karl Kuchler
Format:	Article
Language:	English
Published:	MDPI AG 2020-09-01
Subjects:	candida chromatin oxidative stress ATAC-seq
Online Access:	https://www.mdpi.com/2309-608X/6/3/182

Similar Items

Establishing an optimized ATAC-seq protocol for the maize
by: Jo-Wei Allison Hsieh, et al.
Published: (2024-05-01)

scATAC-seq generates more accurate and complete regulatory maps than bulk ATAC-seq
by: E. Ravza Gur, et al.
Published: (2025-01-01)

Ribosome biogenesis disruption mediated chromatin structure changes revealed by SRAtac, a customizable end to end analysis pipeline for ATAC-seq
by: Trevor F. Freeman, et al.
Published: (2023-09-01)

Identification of transcription factor binding sites using ATAC-seq
by: Zhijian Li, et al.
Published: (2019-02-01)

ATAC-Seq Reveals the Landscape of Open Chromatin and cis-Regulatory Elements in the Phytophthora sojae Genome
by: Zhichao Zhang, et al.
Published: (2022-04-01)

Echinocandin Adaptation in <i>Candida albicans</i> Is Accompanied by Altered Chromatin Accessibility at Gene Promoters and by Cell Wall Remodeling
by: Sudisht K. Sah, et al.
Published: (2025-02-01)

Detect accessible chromatin using ATAC-sequencing, from principle to applications
by: Yuanyuan Sun, et al.
Published: (2019-08-01)

txci-ATAC-seq: a massive-scale single-cell technique to profile chromatin accessibility
by: Hao Zhang, et al.
Published: (2024-03-01)

scifi-ATAC-seq: massive-scale single-cell chromatin accessibility sequencing using combinatorial fluidic indexing
by: Xuan Zhang, et al.
Published: (2024-04-01)

ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data
by: Jianhong Ou, et al.
Published: (2018-03-01)

Robust estimation of cancer and immune cell-type proportions from bulk tumor ATAC-Seq data
by: Aurélie Anne-Gaëlle Gabriel, et al.
Published: (2024-10-01)

Single-cell ATAC-seq signal extraction and enhancement with SCATE
by: Zhicheng Ji, et al.
Published: (2020-07-01)

ATAC-Seq identifies regions of open chromatin in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus
by: Dayle Johnston, et al.
Published: (2021-01-01)

I-ATAC: interactive pipeline for the management and pre-processing of ATAC-seq samples
by: Zeeshan Ahmed, et al.
Published: (2017-11-01)

Detecting Differential Transcription Factor Activity from ATAC-Seq Data
by: Ignacio J. Tripodi, et al.
Published: (2018-05-01)

Uncovering uncharacterized binding of transcription factors from ATAC-seq footprinting data
by: Hendrik Schultheis, et al.
Published: (2024-04-01)

simATAC: a single-cell ATAC-seq simulation framework
by: Zeinab Navidi, et al.
Published: (2021-03-01)

Assaying Chromatin Accessibility Using ATAC-Seq in Invertebrate Chordate Embryos
by: Marta Silvia Magri, et al.
Published: (2020-01-01)

GUAVA: A Graphical User Interface for the Analysis and Visualization of ATAC-seq Data
by: Mayur Divate, et al.
Published: (2018-07-01)

ATAC-seq reveals the roles of chromatin accessibility in the chondrocytes of Kashin–Beck disease compared with primary osteoarthritis
by: Sen Wang, et al.
Published: (2023-05-01)

Application of ATAC-Seq for genome-wide analysis of the chromatin state at single myofiber resolution
by: Korin Sahinyan, et al.
Published: (2022-02-01)

An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide-conjugated antibodies
by: Betelehem Solomon Bera, et al.
Published: (2023-04-01)

The landscape of accessible chromatin in bovine oocytes and early embryos
by: Hao Ming, et al.
Published: (2021-03-01)

Identify key transcript factors of adipocyte differentiation in abdominal fat of broilers based on ATAC-seq and RNA-seq
by: Xiaoying Liu, et al.
Published: (2025-05-01)

Integrative ATAC-seq and RNA-seq Analysis of the Longissimus Muscle of Luchuan and Duroc Pigs
by: Weiwei Miao, et al.
Published: (2021-09-01)

Integration of RNA-seq and ATAC-seq identifies muscle-regulated hub genes in cattle
by: Jianfang Wang, et al.
Published: (2022-08-01)

Chromatin Remodeling via Retinoic Acid Action during Murine Spermatogonial Development
by: Christine Schleif, et al.
Published: (2023-03-01)

Investigation of the effects of phthalates on in vitro thyroid models with RNA-Seq and ATAC-Seq
by: Marta Nazzari, et al.
Published: (2023-09-01)

scATACpipe: A nextflow pipeline for comprehensive and reproducible analyses of single cell ATAC-seq data
by: Kai Hu, et al.
Published: (2022-09-01)

Understanding the complex chromatin dynamics in primary human neutrophils during PMA-induced NET formation
by: Brandi Atteberry, et al.
Published: (2024-10-01)

Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex
by: Lucas T Gray, et al.
Published: (2017-01-01)

EpiMethylTag: simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation
by: Priscillia Lhoumaud, et al.
Published: (2019-11-01)

Chromatin accessibility: methods, mechanisms, and biological insights
by: Andrés R. Mansisidor, et al.
Published: (2022-12-01)

Integrative single-cell RNA-seq and ATAC-seq analysis of myogenic differentiation in pig
by: Shufang Cai, et al.
Published: (2023-02-01)

IGN: Invariable gene set-based normalization for chromatin accessibility profile data analysis
by: Shengen Shawn Hu, et al.
Published: (2025-01-01)

Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers
by: Alex M. Mawla, et al.
Published: (2023-04-01)

Chromatin accessibility dynamics across C. elegans development and ageing
by: Jürgen Jänes, et al.
Published: (2018-10-01)

Combining ATAC-seq and RNA-seq reveals key genes for gonadal abnormalities in one-month-old XX-DSD pigs
by: Congying Yu, et al.
Published: (2025-05-01)

Chromatin accessibility landscape of pediatric T‐lymphoblastic leukemia and human T‐cell precursors
by: Büşra Erarslan‐Uysal, et al.
Published: (2020-08-01)

Dynamic chromatin accessibility landscape changes following interleukin-1 stimulation
by: Matt J Barter, et al.
Published: (2021-01-01)