Genomic benchmarks: a collection of datasets for genomic sequence classification
Abstract Background Recently, deep neural networks have been successfully applied in many biological fields. In 2020, a deep learning model AlphaFold won the protein folding competition with predicted structures within the error tolerance of experimental methods. However, this solution to the most p...
| Published in: | BMC Genomic Data |
|---|---|
| Main Authors: | Katarína Grešová, Vlastimil Martinek, David Čechák, Petr Šimeček, Panagiotis Alexiou |
| Format: | Article |
| Language: | English |
| Published: |
BMC
2023-05-01
|
| Subjects: | |
| Online Access: | https://doi.org/10.1186/s12863-023-01123-8 |
Similar Items
Image Classification With Small Datasets: Overview and Benchmark
by: Lorenzo Brigato, et al.
Published: (2022-01-01)
by: Lorenzo Brigato, et al.
Published: (2022-01-01)
Delving into Underwater Image Utility: Benchmark Dataset and Prediction Model
by: Jiapeng Liu, et al.
Published: (2025-05-01)
by: Jiapeng Liu, et al.
Published: (2025-05-01)
A Large Benchmark Dataset for Individual Sheep Face Recognition
by: Yue Pang, et al.
Published: (2023-08-01)
by: Yue Pang, et al.
Published: (2023-08-01)
Performance Benchmarking and Analysis of Prognostic Methods for CMAPSS Datasets
by: Emmanuel Ramasso, et al.
Published: (2014-06-01)
by: Emmanuel Ramasso, et al.
Published: (2014-06-01)
Dynamic Multidimensional Knapsack Problem benchmark datasets
by: Jonas Skackauskas, et al.
Published: (2022-12-01)
by: Jonas Skackauskas, et al.
Published: (2022-12-01)
Hyperspectral Image Classification on Large-Scale Agricultural Crops: The Heilongjiang Benchmark Dataset, Validation Procedure, and Baseline Results
by: Hongzhe Zhang, et al.
Published: (2024-01-01)
by: Hongzhe Zhang, et al.
Published: (2024-01-01)
Benchmarking long-read genome sequence alignment tools for human genomics applications
by: Jonathan LoTempio, et al.
Published: (2023-12-01)
by: Jonathan LoTempio, et al.
Published: (2023-12-01)
RBP-Tar – a searchable database for experimental RBP binding sites [version 3; peer review: 1 approved, 2 approved with reservations]
by: Panagiotis Alexiou, et al.
Published: (2024-11-01)
by: Panagiotis Alexiou, et al.
Published: (2024-11-01)
Benchmark Datasets for Fluid Flow Analysis
by: Wenhao Jia, et al.
Published: (2025-01-01)
by: Wenhao Jia, et al.
Published: (2025-01-01)
1D Barcode Detection: Novel Benchmark Datasets and Comprehensive Comparison of Deep Convolutional Neural Network Approaches
by: Teerawat Kamnardsiri, et al.
Published: (2022-11-01)
by: Teerawat Kamnardsiri, et al.
Published: (2022-11-01)
Benchmarking 2D Egocentric Hand Pose Datasets
by: Olga Taran, et al.
Published: (2025-01-01)
by: Olga Taran, et al.
Published: (2025-01-01)
A Benchmark for Maritime Object Detection with Centernet on an Improved Dataset, ABOships-PLUS
by: Bogdan Iancu, et al.
Published: (2023-08-01)
by: Bogdan Iancu, et al.
Published: (2023-08-01)
LimeSoDa: A dataset collection for benchmarking of machine learning regressors in digital soil mapping
by: Jonas Schmidinger, et al.
Published: (2025-07-01)
by: Jonas Schmidinger, et al.
Published: (2025-07-01)
Genomic variant benchmark: if you cannot measure it, you cannot improve it
by: Sina Majidian, et al.
Published: (2023-10-01)
by: Sina Majidian, et al.
Published: (2023-10-01)
Recommendations for the creation of benchmark datasets for reproducible artificial intelligence in radiology
by: Nikos Sourlos, et al.
Published: (2024-10-01)
by: Nikos Sourlos, et al.
Published: (2024-10-01)
Benchmarking Spike-Based Visual Recognition: a Dataset and Evaluation
by: Qian Liu, et al.
Published: (2016-11-01)
by: Qian Liu, et al.
Published: (2016-11-01)
A Sentinel-2 Multiyear, Multicountry Benchmark Dataset for Crop Classification and Segmentation With Deep Learning
by: Dimitrios Sykas, et al.
Published: (2022-01-01)
by: Dimitrios Sykas, et al.
Published: (2022-01-01)
Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance
by: Ruth E. Timme, et al.
Published: (2017-10-01)
by: Ruth E. Timme, et al.
Published: (2017-10-01)
Current and Forthcoming Approaches for Benchmarking Genetic and Genomic Diversity
by: Natalia C. García, et al.
Published: (2021-04-01)
by: Natalia C. García, et al.
Published: (2021-04-01)
CUS3D: A New Comprehensive Urban-Scale Semantic-Segmentation 3D Benchmark Dataset
by: Lin Gao, et al.
Published: (2024-03-01)
by: Lin Gao, et al.
Published: (2024-03-01)
Review on Deep Learning Algorithms and Benchmark Datasets for Pairwise Global Point Cloud Registration
by: Yang Zhao, et al.
Published: (2023-04-01)
by: Yang Zhao, et al.
Published: (2023-04-01)
Large-Scale Indoor Visual–Geometric Multimodal Dataset and Benchmark for Novel View Synthesis
by: Junming Cao, et al.
Published: (2024-09-01)
by: Junming Cao, et al.
Published: (2024-09-01)
OHSCR: Benchmarks Dataset for Offline Handwritten Sindhi Character Recognition
by: Jakhro Abdul Naveed, et al.
Published: (2024-05-01)
by: Jakhro Abdul Naveed, et al.
Published: (2024-05-01)
DLR HySU—A Benchmark Dataset for Spectral Unmixing
by: Daniele Cerra, et al.
Published: (2021-06-01)
by: Daniele Cerra, et al.
Published: (2021-06-01)
An Entropy-Based Method with a New Benchmark Dataset for Chinese Textual Affective Structure Analysis
by: Shufeng Xiong, et al.
Published: (2023-05-01)
by: Shufeng Xiong, et al.
Published: (2023-05-01)
Epitope Prediction Based on Random Peptide Library Screening: Benchmark Dataset and Prediction Tools Evaluation
by: Yanxin Huang, et al.
Published: (2011-06-01)
by: Yanxin Huang, et al.
Published: (2011-06-01)
Revisiting the Effectiveness of 3D Object Recognition Benchmarks
by: Hyunsoo Song, et al.
Published: (2023-01-01)
by: Hyunsoo Song, et al.
Published: (2023-01-01)
Dataset including whole blood gene expression profiles and matched leukocyte counts with utility for benchmarking cellular deconvolution pipelines
by: Grant C. O’Connell
Published: (2024-05-01)
by: Grant C. O’Connell
Published: (2024-05-01)
RobotP: A Benchmark Dataset for 6D Object Pose Estimation
by: Honglin Yuan, et al.
Published: (2021-02-01)
by: Honglin Yuan, et al.
Published: (2021-02-01)
Local earthquakes detection: A benchmark dataset of 3-component seismograms built on a global scale
by: Fabrizio Magrini, et al.
Published: (2020-12-01)
by: Fabrizio Magrini, et al.
Published: (2020-12-01)
Creating and leveraging SAR benchmark datasets to facilitate machine learning application
by: Xu Zhang, et al.
Published: (2025-08-01)
by: Xu Zhang, et al.
Published: (2025-08-01)
Benchmark dataset on feeding intensity of the pearl gentian grouper(Epinephelus fuscoguttatus♀×E. lanceolatus♂)
by: Haijing Qin, et al.
Published: (2025-03-01)
by: Haijing Qin, et al.
Published: (2025-03-01)
On Creating Benchmark Dataset for Aerial Image Interpretation: Reviews, Guidances, and Million-AID
by: Yang Long, et al.
Published: (2021-01-01)
by: Yang Long, et al.
Published: (2021-01-01)
Dataset Characteristics Identification for Federated SPARQL Query
by: Nur Aini Rakhmawati, et al.
Published: (2019-05-01)
by: Nur Aini Rakhmawati, et al.
Published: (2019-05-01)
SAREnv: An Open-Source Dataset and Benchmark Tool for Informed Wilderness Search and Rescue Using UAVs
by: Kasper Andreas Rømer Grøntved, et al.
Published: (2025-09-01)
by: Kasper Andreas Rømer Grøntved, et al.
Published: (2025-09-01)
Recursive Elimination of “Outliers” to Get Benchmark Dataset
by: Langsha Liu, et al.
Published: (2024-01-01)
by: Langsha Liu, et al.
Published: (2024-01-01)
Automatic Production of Deep Learning Benchmark Dataset for Affine-Invariant Feature Matching
by: Guobiao Yao, et al.
Published: (2023-01-01)
by: Guobiao Yao, et al.
Published: (2023-01-01)
OMAD-6: Advancing Offshore Mariculture Monitoring with a Comprehensive Six-Type Dataset and Performance Benchmark
by: Zewen Mo, et al.
Published: (2024-12-01)
by: Zewen Mo, et al.
Published: (2024-12-01)
Technical Solution Discussion for Key Challenges of Operational Convolutional Neural Network-Based Building-Damage Assessment from Satellite Imagery: Perspective from Benchmark xBD Dataset
by: Jinhua Su, et al.
Published: (2020-11-01)
by: Jinhua Su, et al.
Published: (2020-11-01)
A benchmark for hypothalamus segmentation on T1-weighted MR images
by: Livia Rodrigues, et al.
Published: (2022-12-01)
by: Livia Rodrigues, et al.
Published: (2022-12-01)
Similar Items
-
Image Classification With Small Datasets: Overview and Benchmark
by: Lorenzo Brigato, et al.
Published: (2022-01-01) -
Delving into Underwater Image Utility: Benchmark Dataset and Prediction Model
by: Jiapeng Liu, et al.
Published: (2025-05-01) -
A Large Benchmark Dataset for Individual Sheep Face Recognition
by: Yue Pang, et al.
Published: (2023-08-01) -
Performance Benchmarking and Analysis of Prognostic Methods for CMAPSS Datasets
by: Emmanuel Ramasso, et al.
Published: (2014-06-01) -
Dynamic Multidimensional Knapsack Problem benchmark datasets
by: Jonas Skackauskas, et al.
Published: (2022-12-01)
