bettercallsal: better calling of Salmonella serotypes from enrichment cultures using shotgun metagenomic profiling and its application in an outbreak setting

Most current Salmonella subtyping analyses rely on whole genome sequencing (WGS), which focuses on the high-resolution analysis of single genomes or multiple single genomes from the isolated colonies on microbiological agar plates. In this study, we introduce bioinformatics innovations for a metagen...

وصف كامل

التفاصيل البيبلوغرافية
الحاوية / القاعدة:	Frontiers in Microbiology
المؤلفون الرئيسيون:	Kranti Konganti, Elizabeth Reed, Mark Mammel, Tunc Kayikcioglu, Rachel Binet, Karen Jarvis, Christina M. Ferreira, Rebecca L. Bell, Jie Zheng, Amanda M. Windsor, Andrea Ottesen, Christopher J. Grim, Padmini Ramachandran
التنسيق:	مقال
اللغة:	الإنجليزية
منشور في:	Frontiers Media S.A. 2023-08-01
الموضوعات:	metagenomics Salmonella BAM quasi-metagenomics foodborne
الوصول للمادة أونلاين:	https://www.frontiersin.org/articles/10.3389/fmicb.2023.1200983/full

مواد مشابهة

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