Natural history and molecular evolution of demersal Mediterranean sharks and skates inferred by comparative phylogeographic and demographic analyses

Background The unique and complex paleoclimatic and paleogeographic events which affected the Mediterranean Sea since late Miocene deeply influenced the distribution and evolution of marine organisms and shaped their genetic structure. Following the Messinian salinity crisis and the sea-level fluctu...

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المؤلفون الرئيسيون: Alice Ferrari, Fausto Tinti, Victoria Bertucci Maresca, Alessandro Velonà, Rita Cannas, Ioannis Thasitis, Filipe Oliveira Costa, Maria Cristina Follesa, Daniel Golani, Farid Hemida, Sarah J. Helyar, Cecilia Mancusi, Antonello Mulas, Fabrizio Serena, Letizia Sion, Marco Stagioni, Alessia Cariani
التنسيق: مقال
اللغة:الإنجليزية
منشور في: PeerJ Inc. 2018-09-01
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الوصول للمادة أونلاين:https://peerj.com/articles/5560.pdf
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author Alice Ferrari
Fausto Tinti
Victoria Bertucci Maresca
Alessandro Velonà
Rita Cannas
Ioannis Thasitis
Filipe Oliveira Costa
Maria Cristina Follesa
Daniel Golani
Farid Hemida
Sarah J. Helyar
Cecilia Mancusi
Antonello Mulas
Fabrizio Serena
Letizia Sion
Marco Stagioni
Alessia Cariani
author_facet Alice Ferrari
Fausto Tinti
Victoria Bertucci Maresca
Alessandro Velonà
Rita Cannas
Ioannis Thasitis
Filipe Oliveira Costa
Maria Cristina Follesa
Daniel Golani
Farid Hemida
Sarah J. Helyar
Cecilia Mancusi
Antonello Mulas
Fabrizio Serena
Letizia Sion
Marco Stagioni
Alessia Cariani
author_sort Alice Ferrari
collection DOAJ
container_title PeerJ
description Background The unique and complex paleoclimatic and paleogeographic events which affected the Mediterranean Sea since late Miocene deeply influenced the distribution and evolution of marine organisms and shaped their genetic structure. Following the Messinian salinity crisis and the sea-level fluctuations during the Pleistocene, several Mediterranean marine species developed deep genetic differentiation, and some underwent rapid radiation. Here, we consider two of the most prioritized groups for conservation in the light of their evolutionary history: sharks and rays (elasmobranchs). This paper deals with a comparative multispecies analysis of phylogeographic structure and historical demography in two pairs of sympatric, phylogenetically- and ecologically-related elasmobranchs, two scyliorhinid catsharks (Galeus melastomus, Scyliorhinus canicula) and two rajid skates (Raja clavata, Raja miraletus). Sampling and experimental analyses were designed to primarily test if the Sicilian Channel can be considered as effective eco-physiological barrier for Mediterranean demersal sympatric elasmobranchs. Methods The phylogeography and the historical demography of target species were inferred by analysing the nucleotide variation of three mitochondrial DNA markers (i.e., partial sequence of COI, NADH2 and CR) obtained from a total of 248 individuals sampled in the Western and Eastern Mediterranean Sea as well as in the adjacent northeastern Atlantic Ocean. Phylogeographic analysis was performed by haplotype networking and testing spatial genetic differentiation of samples (i.e., analysis of molecular variance and of principal components). Demographic history of Mediterranean populations was reconstructed using mismatch distribution and Bayesian Skyline Plot analyses. Results No spatial genetic differentiation was identified in either catshark species, while phylogeographic structure of lineages was identified in both skates, with R. miraletus more structured than R. clavata. However, such structuring of skate lineages was not consistent with the separation between Western and Eastern Mediterranean. Sudden demographic expansions occurred synchronously during the upper Pleistocene (40,000–60,000 years ago) in both skates and G. melastomus, likely related to optimal environmental conditions. In contrast, S. canicula experienced a slow and constant increase in population size over the last 350,000 years. Discussion The comparative analysis of phylogeographic and historical demographic patterns for the Mediterranean populations of these elasmobranchs reveals that historical phylogeographic breaks have not had a large impact on their microevolution. We hypothesize that interactions between environmental and ecological/physiological traits may have been the driving force in the microevolution of these demersal elasmobranch species in the Mediterranean rather than oceanographic barriers.
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spelling doaj-art-e003caaff3bd489dbbdc97a3586c13df2025-08-19T23:27:21ZengPeerJ Inc.PeerJ2167-83592018-09-016e556010.7717/peerj.5560Natural history and molecular evolution of demersal Mediterranean sharks and skates inferred by comparative phylogeographic and demographic analysesAlice Ferrari0Fausto Tinti1Victoria Bertucci Maresca2Alessandro Velonà3Rita Cannas4Ioannis Thasitis5Filipe Oliveira Costa6Maria Cristina Follesa7Daniel Golani8Farid Hemida9Sarah J. Helyar10Cecilia Mancusi11Antonello Mulas12Fabrizio Serena13Letizia Sion14Marco Stagioni15Alessia Cariani16Department of Biological, Geological & Environmental Sciences (BiGeA), University of Bologna, Bologna, ItalyDepartment of Biological, Geological & Environmental Sciences (BiGeA), University of Bologna, Bologna, ItalyDepartment of Biological, Geological & Environmental Sciences (BiGeA), University of Bologna, Bologna, ItalyDepartment of Biological, Geological & Environmental Sciences (BiGeA), University of Bologna, Bologna, ItalyDepartment of Life Sciences and Environment, University of Cagliari, Cagliari, ItalyDepartment of Fisheries and Marine Research, Ministry of Agriculture, Natural Resources and Environment, Nicosia, CyprusCentre of Molecular and Environmental Biology (CBMA), University of Minho, Braga, PortugalDepartment of Life Sciences and Environment, University of Cagliari, Cagliari, ItalyDepartment of Evolution, Systematics and Ecology, Hebrew University of Jerusalem, Jerusalem, IsraelEcole Nationale Supérieure des Sciences de la Mer et de Aménagement du Littoral (ENSSMAL), Algiers, AlgeriaSchool of Biological Sciences, Institute for Global Food Security, The Queen’s University Belfast, Belfast, United KingdomRegional Agency for Environmental Protection-Toscana (ARPAT), Livorno, ItalyDepartment of Life Sciences and Environment, University of Cagliari, Cagliari, ItalyInstitute Coastal Marine Environment, Italian National Research Council (CNR-IAMC), Mazara del Vallo, ItalyDepartment of Biology, University of Bari, Bari, ItalyDepartment of Biological, Geological & Environmental Sciences (BiGeA), University of Bologna, Bologna, ItalyDepartment of Biological, Geological & Environmental Sciences (BiGeA), University of Bologna, Bologna, ItalyBackground The unique and complex paleoclimatic and paleogeographic events which affected the Mediterranean Sea since late Miocene deeply influenced the distribution and evolution of marine organisms and shaped their genetic structure. Following the Messinian salinity crisis and the sea-level fluctuations during the Pleistocene, several Mediterranean marine species developed deep genetic differentiation, and some underwent rapid radiation. Here, we consider two of the most prioritized groups for conservation in the light of their evolutionary history: sharks and rays (elasmobranchs). This paper deals with a comparative multispecies analysis of phylogeographic structure and historical demography in two pairs of sympatric, phylogenetically- and ecologically-related elasmobranchs, two scyliorhinid catsharks (Galeus melastomus, Scyliorhinus canicula) and two rajid skates (Raja clavata, Raja miraletus). Sampling and experimental analyses were designed to primarily test if the Sicilian Channel can be considered as effective eco-physiological barrier for Mediterranean demersal sympatric elasmobranchs. Methods The phylogeography and the historical demography of target species were inferred by analysing the nucleotide variation of three mitochondrial DNA markers (i.e., partial sequence of COI, NADH2 and CR) obtained from a total of 248 individuals sampled in the Western and Eastern Mediterranean Sea as well as in the adjacent northeastern Atlantic Ocean. Phylogeographic analysis was performed by haplotype networking and testing spatial genetic differentiation of samples (i.e., analysis of molecular variance and of principal components). Demographic history of Mediterranean populations was reconstructed using mismatch distribution and Bayesian Skyline Plot analyses. Results No spatial genetic differentiation was identified in either catshark species, while phylogeographic structure of lineages was identified in both skates, with R. miraletus more structured than R. clavata. However, such structuring of skate lineages was not consistent with the separation between Western and Eastern Mediterranean. Sudden demographic expansions occurred synchronously during the upper Pleistocene (40,000–60,000 years ago) in both skates and G. melastomus, likely related to optimal environmental conditions. In contrast, S. canicula experienced a slow and constant increase in population size over the last 350,000 years. Discussion The comparative analysis of phylogeographic and historical demographic patterns for the Mediterranean populations of these elasmobranchs reveals that historical phylogeographic breaks have not had a large impact on their microevolution. We hypothesize that interactions between environmental and ecological/physiological traits may have been the driving force in the microevolution of these demersal elasmobranch species in the Mediterranean rather than oceanographic barriers.https://peerj.com/articles/5560.pdfChondrichthyansPhylogeographyDemographyNatural historyDemersal elasmobranchsMediterranean sea
spellingShingle Alice Ferrari
Fausto Tinti
Victoria Bertucci Maresca
Alessandro Velonà
Rita Cannas
Ioannis Thasitis
Filipe Oliveira Costa
Maria Cristina Follesa
Daniel Golani
Farid Hemida
Sarah J. Helyar
Cecilia Mancusi
Antonello Mulas
Fabrizio Serena
Letizia Sion
Marco Stagioni
Alessia Cariani
Natural history and molecular evolution of demersal Mediterranean sharks and skates inferred by comparative phylogeographic and demographic analyses
Chondrichthyans
Phylogeography
Demography
Natural history
Demersal elasmobranchs
Mediterranean sea
title Natural history and molecular evolution of demersal Mediterranean sharks and skates inferred by comparative phylogeographic and demographic analyses
title_full Natural history and molecular evolution of demersal Mediterranean sharks and skates inferred by comparative phylogeographic and demographic analyses
title_fullStr Natural history and molecular evolution of demersal Mediterranean sharks and skates inferred by comparative phylogeographic and demographic analyses
title_full_unstemmed Natural history and molecular evolution of demersal Mediterranean sharks and skates inferred by comparative phylogeographic and demographic analyses
title_short Natural history and molecular evolution of demersal Mediterranean sharks and skates inferred by comparative phylogeographic and demographic analyses
title_sort natural history and molecular evolution of demersal mediterranean sharks and skates inferred by comparative phylogeographic and demographic analyses
topic Chondrichthyans
Phylogeography
Demography
Natural history
Demersal elasmobranchs
Mediterranean sea
url https://peerj.com/articles/5560.pdf
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