The complete chloroplast genome of Lilium paradoxum Stearn (Liliaceae) from southwestern China
Lilium paradoxum, a herb from southeastern Xizang, China, has its first complete chloroplast genome sequenced using next-generation sequencing. The genome is 151,814 bp, consisting of inverted repeats (IRs; 26,323 bp), small single-copy (SSC; 17,524 bp), and large single-copy regions (LSC; 81,644 bp...
| Published in: | Mitochondrial DNA. Part B. Resources |
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| Main Authors: | , , , , , , |
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2024-11-01
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| Subjects: | |
| Online Access: | https://www.tandfonline.com/doi/10.1080/23802359.2024.2432367 |
| _version_ | 1849569223438761984 |
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| author | Li Luan Yu-Mei Yuan Yue-Liang Jiang Yu-Xi Wang Jian-Hua Ma Qiao-Ling He Yun-Dong Gao |
| author_facet | Li Luan Yu-Mei Yuan Yue-Liang Jiang Yu-Xi Wang Jian-Hua Ma Qiao-Ling He Yun-Dong Gao |
| author_sort | Li Luan |
| collection | DOAJ |
| container_title | Mitochondrial DNA. Part B. Resources |
| description | Lilium paradoxum, a herb from southeastern Xizang, China, has its first complete chloroplast genome sequenced using next-generation sequencing. The genome is 151,814 bp, consisting of inverted repeats (IRs; 26,323 bp), small single-copy (SSC; 17,524 bp), and large single-copy regions (LSC; 81,644 bp). It encodes 112 unique genes: 78 protein-coding, 30 tRNA, and 4 rRNA genes. Phylogenetic analysis of 22 genomes shows L. paradoxum is closely related to L. gongshanense, L. apertum, and L. souliei. These findings enhance understanding of Lilium's phylogenetic relationships and evolution, particularly the Nomocharis clade in the Hengduan Mountains. |
| format | Article |
| id | doaj-art-e07c5fc10f214d83afa821de45aa9d05 |
| institution | Directory of Open Access Journals |
| issn | 2380-2359 |
| language | English |
| publishDate | 2024-11-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| spelling | doaj-art-e07c5fc10f214d83afa821de45aa9d052025-08-20T02:31:52ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592024-11-019111596160010.1080/23802359.2024.2432367The complete chloroplast genome of Lilium paradoxum Stearn (Liliaceae) from southwestern ChinaLi Luan0Yu-Mei Yuan1Yue-Liang Jiang2Yu-Xi Wang3Jian-Hua Ma4Qiao-Ling He5Yun-Dong Gao6PowerChina Chengdu Engineering Corporation Limited, Chengdu, Sichuan, ChinaCAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, Sichuan, ChinaPowerChina Chengdu Engineering Corporation Limited, Chengdu, Sichuan, ChinaPowerChina Chengdu Engineering Corporation Limited, Chengdu, Sichuan, ChinaPowerChina Chengdu Engineering Corporation Limited, Chengdu, Sichuan, ChinaPowerChina Chengdu Engineering Corporation Limited, Chengdu, Sichuan, ChinaCAS Key Laboratory of Mountain Ecological Restoration and Bioresource Utilization & Ecological Restoration and Biodiversity Conservation Key Laboratory of Sichuan Province, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu, Sichuan, ChinaLilium paradoxum, a herb from southeastern Xizang, China, has its first complete chloroplast genome sequenced using next-generation sequencing. The genome is 151,814 bp, consisting of inverted repeats (IRs; 26,323 bp), small single-copy (SSC; 17,524 bp), and large single-copy regions (LSC; 81,644 bp). It encodes 112 unique genes: 78 protein-coding, 30 tRNA, and 4 rRNA genes. Phylogenetic analysis of 22 genomes shows L. paradoxum is closely related to L. gongshanense, L. apertum, and L. souliei. These findings enhance understanding of Lilium's phylogenetic relationships and evolution, particularly the Nomocharis clade in the Hengduan Mountains.https://www.tandfonline.com/doi/10.1080/23802359.2024.2432367LiliaceaeLilium paradoxumchloroplast genomephylogeny |
| spellingShingle | Li Luan Yu-Mei Yuan Yue-Liang Jiang Yu-Xi Wang Jian-Hua Ma Qiao-Ling He Yun-Dong Gao The complete chloroplast genome of Lilium paradoxum Stearn (Liliaceae) from southwestern China Liliaceae Lilium paradoxum chloroplast genome phylogeny |
| title | The complete chloroplast genome of Lilium paradoxum Stearn (Liliaceae) from southwestern China |
| title_full | The complete chloroplast genome of Lilium paradoxum Stearn (Liliaceae) from southwestern China |
| title_fullStr | The complete chloroplast genome of Lilium paradoxum Stearn (Liliaceae) from southwestern China |
| title_full_unstemmed | The complete chloroplast genome of Lilium paradoxum Stearn (Liliaceae) from southwestern China |
| title_short | The complete chloroplast genome of Lilium paradoxum Stearn (Liliaceae) from southwestern China |
| title_sort | complete chloroplast genome of lilium paradoxum stearn liliaceae from southwestern china |
| topic | Liliaceae Lilium paradoxum chloroplast genome phylogeny |
| url | https://www.tandfonline.com/doi/10.1080/23802359.2024.2432367 |
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