| Summary: | Three-dimensional (3D) ocean physical fields are essential for understanding ocean dynamics, but reconstructing them solely from sea-surface remote sensing remains challenging. We present 3DV-Unet, an end-to-end deep learning framework that reconstructs eddy-resolving three-dimensional essential ocean variables (temperature, salinity, and currents) from multi-source satellite data. The model employs a 3D Vision Transformer bottleneck to capture cross-depth and cross-variable dependencies, ensuring physically consistent reconstruction. Trained on 2011–2019 reanalysis and satellite data, 3DV-Unet achieves RMSEs of ~0.30 °C for temperature, 0.11 psu for salinity, and 0.05 m/s for currents, with all <i>R</i><sup>2</sup> values above 0.93. Error analyses further indicate higher reconstruction errors in dynamically complex regions such as the Kuroshio Extension, while spectral analysis indicates good agreement at 100 km+ but systematic deviation in the 20–100 km band. Independent validation against 6113 Argo profiles confirms its ability to reproduce realistic vertical thermohaline structures. Moreover, the reconstructed 3D fields capture mesoscale eddy structures and their life cycle, offering a valuable basis for investigating ocean circulation, energy transport, and regional variability. These results demonstrate the potential of end-to-end volumetric deep learning for advancing high-resolution 3D ocean reconstruction and supporting physical oceanography and climate studies.
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