Genome-Wide Analysis of GATA Transcription Factor Family in Quinoa (Chenopodium quinoa): Identification, Characterization, and Expression Profiles

GATA-binding factor (GATA) proteins are the transcription factor (TF) family that are commonly involved in plant growth and development. The GATA TF family has been successfully identified and characterized for various higher plant species, but there is little research on the GATA TF family in quino...

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Bibliographic Details
Published in:Journal of Tropical Life Science
Main Authors: Thi Man Le, Hong Viet La, Ha Duc Chu, Chau Thuy Pham, Quyen Thi Ha, Thi Ngoc Quynh Le, Thi Thanh Huyen Tran, Van Tien Tran, Huy Gioi Dong, Minh Hong Pham, Vinh Thanh Tran, Thi Bich Ngoc Chu, Phi Bang Cao
Format: Article
Language:English
Published: University of Brawijaya 2024-05-01
Subjects:
characterization
expression pattern
gata transcription factor
identification
quinoa
Online Access:https://jtrolis.ub.ac.id/index.php/jtrolis/article/view/3040
Description
Summary:GATA-binding factor (GATA) proteins are the transcription factor (TF) family that are commonly involved in plant growth and development. The GATA TF family has been successfully identified and characterized for various higher plant species, but there is little research on the GATA TF family in quinoa (Chenopodium quinoa). In this present study, a total of 32 CqGATA genes were identified and analyzed in the quinoa genome. While the general features of the CqGATA TFs in quinoa were slightly variable, the majority of genes encoding the CqGATA TFs contained two and three exons. Our phylogenetic analysis demonstrated that the CqGATA TFs could be classified into four different groups. Gene expression analysis indicated that the expression profiles of the CqGATA genes varied in different tissues. Overall, our study could provide a reference for further functional characterization of the CqGATA genes in quinoa.
ISSN:2087-5517
2527-4376

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