Genome-Wide Analysis of GATA Transcription Factor Family in Quinoa (Chenopodium quinoa): Identification, Characterization, and Expression Profiles
GATA-binding factor (GATA) proteins are the transcription factor (TF) family that are commonly involved in plant growth and development. The GATA TF family has been successfully identified and characterized for various higher plant species, but there is little research on the GATA TF family in quino...
| 發表在: | Journal of Tropical Life Science |
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| Main Authors: | , , , , , , , , , , , , |
| 格式: | Article |
| 語言: | 英语 |
| 出版: |
University of Brawijaya
2024-05-01
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| 主題: | |
| 在線閱讀: | https://jtrolis.ub.ac.id/index.php/jtrolis/article/view/3040 |
| _version_ | 1849553039873015808 |
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| author | Thi Man Le Hong Viet La Ha Duc Chu Chau Thuy Pham Quyen Thi Ha Thi Ngoc Quynh Le Thi Thanh Huyen Tran Van Tien Tran Huy Gioi Dong Minh Hong Pham Vinh Thanh Tran Thi Bich Ngoc Chu Phi Bang Cao |
| author_facet | Thi Man Le Hong Viet La Ha Duc Chu Chau Thuy Pham Quyen Thi Ha Thi Ngoc Quynh Le Thi Thanh Huyen Tran Van Tien Tran Huy Gioi Dong Minh Hong Pham Vinh Thanh Tran Thi Bich Ngoc Chu Phi Bang Cao |
| author_sort | Thi Man Le |
| collection | DOAJ |
| container_title | Journal of Tropical Life Science |
| description | GATA-binding factor (GATA) proteins are the transcription factor (TF) family that are commonly involved in plant growth and development. The GATA TF family has been successfully identified and characterized for various higher plant species, but there is little research on the GATA TF family in quinoa (Chenopodium quinoa). In this present study, a total of 32 CqGATA genes were identified and analyzed in the quinoa genome. While the general features of the CqGATA TFs in quinoa were slightly variable, the majority of genes encoding the CqGATA TFs contained two and three exons. Our phylogenetic analysis demonstrated that the CqGATA TFs could be classified into four different groups. Gene expression analysis indicated that the expression profiles of the CqGATA genes varied in different tissues. Overall, our study could provide a reference for further functional characterization of the CqGATA genes in quinoa. |
| format | Article |
| id | doaj-art-e3d5332091ef4e608d0453a2f110419e |
| institution | Directory of Open Access Journals |
| issn | 2087-5517 2527-4376 |
| language | English |
| publishDate | 2024-05-01 |
| publisher | University of Brawijaya |
| record_format | Article |
| spelling | doaj-art-e3d5332091ef4e608d0453a2f110419e2025-08-20T02:38:51ZengUniversity of BrawijayaJournal of Tropical Life Science2087-55172527-43762024-05-0114221722810.11594/jtls.14.02.022985Genome-Wide Analysis of GATA Transcription Factor Family in Quinoa (Chenopodium quinoa): Identification, Characterization, and Expression ProfilesThi Man Le0https://orcid.org/0009-0008-9839-6117Hong Viet La1https://orcid.org/0000-0002-6016-5857Ha Duc Chu2https://orcid.org/0000-0003-0087-9994Chau Thuy Pham3https://orcid.org/0000-0001-9076-911XQuyen Thi Ha4https://orcid.org/0000-0001-5415-0483Thi Ngoc Quynh Le5https://orcid.org/0009-0006-2839-3776Thi Thanh Huyen Tran6https://orcid.org/0000-0002-5351-6401Van Tien Tran7https://orcid.org/0000-0001-7407-318XHuy Gioi Dong8https://orcid.org/0000-0003-4977-3576Minh Hong Pham9https://orcid.org/0009-0006-7157-8629Vinh Thanh Tran10https://orcid.org/0009-0007-6594-9996Thi Bich Ngoc Chu11https://orcid.org/0009-0009-6197-7249Phi Bang Cao12https://orcid.org/0000-0001-9374-3839Faculty of Natural Sciences, Hung Vuong University, Phu Tho Province 35000, VietnamInstitute of Research and Application, Hanoi Pedagogical University 2, Phuc Yen City, Vinh Phuc Province 280000, VietnamFaculty of Agricultural Technology, University of Engineering and Technology, Vietnam National University HanoiFaculty of Agricultural Technology, University of Engineering and Technology, Vietnam National University Hanoi, Xuan Thuy Road, Cau Giay District, Hanoi City 122300, VietnamFaculty of Agricultural Technology, University of Engineering and Technology, Vietnam National University Hanoi, Xuan Thuy Road, Cau Giay District, Hanoi City 122300, VietnamDepartment of Biotechnology, Thuyloi University, Hanoi City 122300, VietnamFaculty of Biology, Hanoi National University of Education, Hanoi City 122300, VietnamFaculty of Social Management, National Academy of Public Administration, Hanoi City 122300, Vietnam Faculty of Biotechnology, Vietnam National University of Agriculture, Gia Lam District, Hanoi City 122300, VietnamFaculty of Biotechnology, Vietnam National University of Agriculture, Gia Lam District, Hanoi City 122300, VietnamFaculty of Agro-Forestry-Aquaculture, Hung Vuong University, Phu Tho Province 35000, VietnamFaculty of Natural Sciences, Hung Vuong University, Phu Tho Province 35000, VietnamFaculty of Natural Sciences, Hung Vuong University, Phu Tho Province 35000, VietnamGATA-binding factor (GATA) proteins are the transcription factor (TF) family that are commonly involved in plant growth and development. The GATA TF family has been successfully identified and characterized for various higher plant species, but there is little research on the GATA TF family in quinoa (Chenopodium quinoa). In this present study, a total of 32 CqGATA genes were identified and analyzed in the quinoa genome. While the general features of the CqGATA TFs in quinoa were slightly variable, the majority of genes encoding the CqGATA TFs contained two and three exons. Our phylogenetic analysis demonstrated that the CqGATA TFs could be classified into four different groups. Gene expression analysis indicated that the expression profiles of the CqGATA genes varied in different tissues. Overall, our study could provide a reference for further functional characterization of the CqGATA genes in quinoa.https://jtrolis.ub.ac.id/index.php/jtrolis/article/view/3040characterizationexpression patterngata transcription factoridentificationquinoa |
| spellingShingle | Thi Man Le Hong Viet La Ha Duc Chu Chau Thuy Pham Quyen Thi Ha Thi Ngoc Quynh Le Thi Thanh Huyen Tran Van Tien Tran Huy Gioi Dong Minh Hong Pham Vinh Thanh Tran Thi Bich Ngoc Chu Phi Bang Cao Genome-Wide Analysis of GATA Transcription Factor Family in Quinoa (Chenopodium quinoa): Identification, Characterization, and Expression Profiles characterization expression pattern gata transcription factor identification quinoa |
| title | Genome-Wide Analysis of GATA Transcription Factor Family in Quinoa (Chenopodium quinoa): Identification, Characterization, and Expression Profiles |
| title_full | Genome-Wide Analysis of GATA Transcription Factor Family in Quinoa (Chenopodium quinoa): Identification, Characterization, and Expression Profiles |
| title_fullStr | Genome-Wide Analysis of GATA Transcription Factor Family in Quinoa (Chenopodium quinoa): Identification, Characterization, and Expression Profiles |
| title_full_unstemmed | Genome-Wide Analysis of GATA Transcription Factor Family in Quinoa (Chenopodium quinoa): Identification, Characterization, and Expression Profiles |
| title_short | Genome-Wide Analysis of GATA Transcription Factor Family in Quinoa (Chenopodium quinoa): Identification, Characterization, and Expression Profiles |
| title_sort | genome wide analysis of gata transcription factor family in quinoa chenopodium quinoa identification characterization and expression profiles |
| topic | characterization expression pattern gata transcription factor identification quinoa |
| url | https://jtrolis.ub.ac.id/index.php/jtrolis/article/view/3040 |
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