Signatures of Positive Selection in the Genome of <i>Apis mellifera carnica</i>: A Subspecies of European Honeybees

The technology of long reads substantially improved the contingency of the genome assembly, particularly resolving contiguity of the repetitive regions. By integrating the interactive fragment using Hi-C, and the HiFi technique, a solid genome of the honeybee <i>Apis mellifera carnica</i>...

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Bibliographic Details
Published in:Life
Main Authors: Qiang Huang, Yong-Qiang Zhu, Bertrand Fouks, Xu-Jiang He, Qing-Sheng Niu, Hua-Jun Zheng, Zhi-Jiang Zeng
Format: Article
Language:English
Published: MDPI AG 2022-10-01
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Online Access:https://www.mdpi.com/2075-1729/12/10/1642
Description
Summary:The technology of long reads substantially improved the contingency of the genome assembly, particularly resolving contiguity of the repetitive regions. By integrating the interactive fragment using Hi-C, and the HiFi technique, a solid genome of the honeybee <i>Apis mellifera carnica</i> was assembled at the chromosomal level. A distinctive pattern of genes involved in social evolution was found by comparing it with social and solitary bees. A positive selection was identified in genes involved with cold tolerance, which likely underlies the adaptation of this European honeybee subspecies in the north hemisphere. The availability of this new high-quality genome will foster further studies and advances on genome variation during subspeciation, honeybee breeding and comparative genomics.
ISSN:2075-1729