The complete chloroplast genome sequence of the endemic and rare orchid Nothodoritis zhejiangensis (Orchidaceae) in China
Nothodoritis zhejiangensis (Orchidaceae) is a rare orchid unique to China of great horticultural value. The complete chloroplast (cp) genome of this species is 143,522 bp in length and the total GC content is 36.8%. It includes a large single copy (LSC) region of 83,830 bp in length, a small single...
| Published in: | Mitochondrial DNA. Part B. Resources |
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| Main Authors: | , , , , , |
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2021-10-01
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| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1972867 |
| _version_ | 1851881430667231232 |
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| author | Lei Yang Qi Wu Mingqi Yang Dong Zhang Shubin Dong Jin Cheng |
| author_facet | Lei Yang Qi Wu Mingqi Yang Dong Zhang Shubin Dong Jin Cheng |
| author_sort | Lei Yang |
| collection | DOAJ |
| container_title | Mitochondrial DNA. Part B. Resources |
| description | Nothodoritis zhejiangensis (Orchidaceae) is a rare orchid unique to China of great horticultural value. The complete chloroplast (cp) genome of this species is 143,522 bp in length and the total GC content is 36.8%. It includes a large single copy (LSC) region of 83,830 bp in length, a small single copy (SSC) region of 10,764 bp, and a pair of inverted repeat regions (IRs) with 24,464 bp. The cp genome contains 120 functional genes, including 74 protein-coding genes, 38 tRNA genes, and eight rRNA genes. The phylogenetic tree constructed by the maximum-likelihood method showed that the taxonomic status of N. zhejiangensis was clustered with the species in Phalaenopsis. |
| format | Article |
| id | doaj-art-e41cfb4dc48e4fd792c7ac1eadf97db5 |
| institution | Directory of Open Access Journals |
| issn | 2380-2359 |
| language | English |
| publishDate | 2021-10-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| spelling | doaj-art-e41cfb4dc48e4fd792c7ac1eadf97db52025-08-19T22:13:06ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-10-016102931293210.1080/23802359.2021.19728671972867The complete chloroplast genome sequence of the endemic and rare orchid Nothodoritis zhejiangensis (Orchidaceae) in ChinaLei Yang0Qi Wu1Mingqi Yang2Dong Zhang3Shubin Dong4Jin Cheng5College of Biological Sciences and Technology, Beijing Laboratory of Urban and Rural Ecological Environment, Beijing Key Laboratory of Ornamental Plants Germplasm Innovation and Molecular Breeding, National Engineering Laboratory for Tree Breeding, Beijing Forestry UniversityCollege of Biological Sciences and Technology, Beijing Laboratory of Urban and Rural Ecological Environment, Beijing Key Laboratory of Ornamental Plants Germplasm Innovation and Molecular Breeding, National Engineering Laboratory for Tree Breeding, Beijing Forestry UniversityBeijing Forestry University Forest Science Company LtdBeijing Forestry University Forest Science Company LtdCollege of Biological Sciences and Technology, Beijing Laboratory of Urban and Rural Ecological Environment, Beijing Key Laboratory of Ornamental Plants Germplasm Innovation and Molecular Breeding, National Engineering Laboratory for Tree Breeding, Beijing Forestry UniversityCollege of Biological Sciences and Technology, Beijing Laboratory of Urban and Rural Ecological Environment, Beijing Key Laboratory of Ornamental Plants Germplasm Innovation and Molecular Breeding, National Engineering Laboratory for Tree Breeding, Beijing Forestry UniversityNothodoritis zhejiangensis (Orchidaceae) is a rare orchid unique to China of great horticultural value. The complete chloroplast (cp) genome of this species is 143,522 bp in length and the total GC content is 36.8%. It includes a large single copy (LSC) region of 83,830 bp in length, a small single copy (SSC) region of 10,764 bp, and a pair of inverted repeat regions (IRs) with 24,464 bp. The cp genome contains 120 functional genes, including 74 protein-coding genes, 38 tRNA genes, and eight rRNA genes. The phylogenetic tree constructed by the maximum-likelihood method showed that the taxonomic status of N. zhejiangensis was clustered with the species in Phalaenopsis.http://dx.doi.org/10.1080/23802359.2021.1972867nothodoritis zhejiangensiscomplete chloroplast genomeplant species with extremely small population (psesp)orchidaceaephylogenomics |
| spellingShingle | Lei Yang Qi Wu Mingqi Yang Dong Zhang Shubin Dong Jin Cheng The complete chloroplast genome sequence of the endemic and rare orchid Nothodoritis zhejiangensis (Orchidaceae) in China nothodoritis zhejiangensis complete chloroplast genome plant species with extremely small population (psesp) orchidaceae phylogenomics |
| title | The complete chloroplast genome sequence of the endemic and rare orchid Nothodoritis zhejiangensis (Orchidaceae) in China |
| title_full | The complete chloroplast genome sequence of the endemic and rare orchid Nothodoritis zhejiangensis (Orchidaceae) in China |
| title_fullStr | The complete chloroplast genome sequence of the endemic and rare orchid Nothodoritis zhejiangensis (Orchidaceae) in China |
| title_full_unstemmed | The complete chloroplast genome sequence of the endemic and rare orchid Nothodoritis zhejiangensis (Orchidaceae) in China |
| title_short | The complete chloroplast genome sequence of the endemic and rare orchid Nothodoritis zhejiangensis (Orchidaceae) in China |
| title_sort | complete chloroplast genome sequence of the endemic and rare orchid nothodoritis zhejiangensis orchidaceae in china |
| topic | nothodoritis zhejiangensis complete chloroplast genome plant species with extremely small population (psesp) orchidaceae phylogenomics |
| url | http://dx.doi.org/10.1080/23802359.2021.1972867 |
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