Scalable probabilistic PCA for large-scale genetic variation data.
Principal component analysis (PCA) is a key tool for understanding population structure and controlling for population stratification in genome-wide association studies (GWAS). With the advent of large-scale datasets of genetic variation, there is a need for methods that can compute principal compon...
| Published in: | PLoS Genetics |
|---|---|
| Main Authors: | Aman Agrawal, Alec M Chiu, Minh Le, Eran Halperin, Sriram Sankararaman |
| Format: | Article |
| Language: | English |
| Published: |
Public Library of Science (PLoS)
2020-05-01
|
| Online Access: | https://doi.org/10.1371/journal.pgen.1008773 |
Similar Items
dotears: Scalable and consistent directed acyclic graph estimation using observational and interventional data
by: Albert Xue, et al.
Published: (2025-02-01)
by: Albert Xue, et al.
Published: (2025-02-01)
STENSL: Microbial Source Tracking with ENvironment SeLection
by: Ulzee An, et al.
Published: (2022-10-01)
by: Ulzee An, et al.
Published: (2022-10-01)
Principal Component Analyses (PCA)-based findings in population genetic studies are highly biased and must be reevaluated
by: Eran Elhaik
Published: (2022-08-01)
by: Eran Elhaik
Published: (2022-08-01)
ColorPCA: Scalable Colored Dimensionality Reduction for Unlabeled High-Dimensional Data
by: Wenqiang Cui, et al.
Published: (2025-01-01)
by: Wenqiang Cui, et al.
Published: (2025-01-01)
Computing feature matrices using PCA-SVD hybrid method on small-scale systems
by: Le Tien Hung, et al.
Published: (2024-12-01)
by: Le Tien Hung, et al.
Published: (2024-12-01)
Rolling Bearing Diagnosis Based on Adaptive Probabilistic PCA and the Enhanced Morphological Filter
by: Yuanqing Luo, et al.
Published: (2020-01-01)
by: Yuanqing Luo, et al.
Published: (2020-01-01)
An Effective Method of Monitoring the Large-Scale Traffic Pattern Based on RMT and PCA
by: Jia Liu, et al.
Published: (2010-01-01)
by: Jia Liu, et al.
Published: (2010-01-01)
Fast kernel-based association testing of non-linear genetic effects for biobank-scale data
by: Boyang Fu, et al.
Published: (2023-08-01)
by: Boyang Fu, et al.
Published: (2023-08-01)
A unified and scalable machine learning framework for feature fusion in object classification using weighted PCA with adaptive concatenation and dynamic scaling
by: Amitav Mahapatra, et al.
Published: (2025-06-01)
by: Amitav Mahapatra, et al.
Published: (2025-06-01)
A probabilistic approach to visualize the effect of missing data on PCA in ancient human genomics
by: Susanne Zabel, et al.
Published: (2025-05-01)
by: Susanne Zabel, et al.
Published: (2025-05-01)
Scalable interpolation of satellite altimetry data with probabilistic machine learning
by: William Gregory, et al.
Published: (2024-08-01)
by: William Gregory, et al.
Published: (2024-08-01)
Scalable and Fully Distributed Localization in Large-Scale Sensor Networks
by: Miao Jin, et al.
Published: (2017-06-01)
by: Miao Jin, et al.
Published: (2017-06-01)
Scalable Boltzmann generators for equilibrium sampling of large-scale materials
by: Maximilian Schebek, et al.
Published: (2026-06-01)
by: Maximilian Schebek, et al.
Published: (2026-06-01)
SuSiE PCA: A scalable Bayesian variable selection technique for principal component analysis
by: Dong Yuan, et al.
Published: (2023-11-01)
by: Dong Yuan, et al.
Published: (2023-11-01)
Data-Driven Optimized Distributed Dynamic PCA for Efficient Monitoring of Large-Scale Dynamic Processes
by: Yang Wang, et al.
Published: (2017-01-01)
by: Yang Wang, et al.
Published: (2017-01-01)
SPAmix: a scalable, accurate, and universal analysis framework for large-scale genetic association studies in admixed populations
by: Yuzhuo Ma, et al.
Published: (2025-10-01)
by: Yuzhuo Ma, et al.
Published: (2025-10-01)
Principal component analysis (PCA) as a genetic diversity tool to understand the variation of rice mutant culture
by: S. Palaniyappan1, P. Arunachalam1*, S. Banumathy1 and S. Muthuramu2
Published: (2024-12-01)
by: S. Palaniyappan1, P. Arunachalam1*, S. Banumathy1 and S. Muthuramu2
Published: (2024-12-01)
Probabilistic, entropy-maximizing control of large-scale neural synchronization.
by: Melisa Menceloglu, et al.
Published: (2021-01-01)
by: Melisa Menceloglu, et al.
Published: (2021-01-01)
Believe it or not? The challenge of validating large scale probabilistic risk models
by: Sayers Paul, et al.
Published: (2016-01-01)
by: Sayers Paul, et al.
Published: (2016-01-01)
Scalable Discrete Event Simulation Tool for Large-Scale Cyber-Physical Energy Systems: Advancing System Efficiency and Scalability
by: Khandaker Akramul Haque, et al.
Published: (2025-01-01)
by: Khandaker Akramul Haque, et al.
Published: (2025-01-01)
The Effect of Model Directionality on Cell-Type-Specific Differential DNA Methylation Analysis
by: Elior Rahmani, et al.
Published: (2022-01-01)
by: Elior Rahmani, et al.
Published: (2022-01-01)
Total Variation PCA-Based Descriptors for Electrocardiography Identity Recognition
by: Haiying Liu, et al.
Published: (2024-01-01)
by: Haiying Liu, et al.
Published: (2024-01-01)
Informational rescaling of PCA maps with application to genetic distance
by: Nassim Nicholas Taleb, et al.
Published: (2025-01-01)
by: Nassim Nicholas Taleb, et al.
Published: (2025-01-01)
Scalable incident detection via natural language processing and probabilistic language models
by: Colin G. Walsh, et al.
Published: (2024-10-01)
by: Colin G. Walsh, et al.
Published: (2024-10-01)
Scalable production process development for NK cells targeting large-scale expansion
by: Takuya Kikuchi, et al.
Published: (2025-12-01)
by: Takuya Kikuchi, et al.
Published: (2025-12-01)
A scalable and modular reservoir implementation for large-scale integrated hydrologic simulations
by: B. D. West, et al.
Published: (2025-01-01)
by: B. D. West, et al.
Published: (2025-01-01)
Smart Scalable ML-Blockchain Framework for Large-Scale Clinical Information Sharing
by: Anand Singh Rajawat, et al.
Published: (2022-10-01)
by: Anand Singh Rajawat, et al.
Published: (2022-10-01)
Performance and Scalability Analysis of SDN-Based Large-Scale Wi-Fi Networks
by: Mohsin Ali, et al.
Published: (2023-03-01)
by: Mohsin Ali, et al.
Published: (2023-03-01)
A Scalable Method to Improve Large-Scale Lidar Topographic Differencing Results
by: Minyoung Jung, et al.
Published: (2023-08-01)
by: Minyoung Jung, et al.
Published: (2023-08-01)
Rinegan: A Scalable Image Processing Architecture for Large Scale Surveillance Applications
by: Xi Luo, et al.
Published: (2021-08-01)
by: Xi Luo, et al.
Published: (2021-08-01)
Probabilistic Temporal Fusion Transformers for Large-Scale KPI Anomaly Detection
by: Haoran Luo, et al.
Published: (2024-01-01)
by: Haoran Luo, et al.
Published: (2024-01-01)
Probabilistic unsupervised classification for large-scale analysis of spectral imaging data
by: Emmanuel Paradis
Published: (2022-03-01)
by: Emmanuel Paradis
Published: (2022-03-01)
AMRomics: a scalable workflow to analyze large microbial genome collections
by: Duc Quang Le, et al.
Published: (2024-07-01)
by: Duc Quang Le, et al.
Published: (2024-07-01)
Automated large-scale prediction of exudative AMD progression using machine-read OCT biomarkers.
by: Akos Rudas, et al.
Published: (2023-02-01)
by: Akos Rudas, et al.
Published: (2023-02-01)
Automated large-scale prediction of exudative AMD progression using machine-read OCT biomarkers
by: Akos Rudas, et al.
Published: (2023-02-01)
by: Akos Rudas, et al.
Published: (2023-02-01)
Carbon price prediction based on a scaled PCA approach.
by: Xiaolu Wei, et al.
Published: (2024-01-01)
by: Xiaolu Wei, et al.
Published: (2024-01-01)
Carbon price prediction based on a scaled PCA approach
by: Xiaolu Wei, et al.
Published: (2024-01-01)
by: Xiaolu Wei, et al.
Published: (2024-01-01)
Numerical Markov Logic Network: A Scalable Probabilistic Framework for Hybrid Knowledge Inference
by: Ping Zhong, et al.
Published: (2021-03-01)
by: Ping Zhong, et al.
Published: (2021-03-01)
Towards the implementation of automated scoring in international large-scale assessments: Scalability and quality control
by: Ji Yoon Jung, et al.
Published: (2025-06-01)
by: Ji Yoon Jung, et al.
Published: (2025-06-01)
An Adaptive Scalable Data Pipeline for Multiclass Attack Classification in Large-Scale IoT Networks
by: Selvam Saravanan, et al.
Published: (2024-06-01)
by: Selvam Saravanan, et al.
Published: (2024-06-01)
Similar Items
-
dotears: Scalable and consistent directed acyclic graph estimation using observational and interventional data
by: Albert Xue, et al.
Published: (2025-02-01) -
STENSL: Microbial Source Tracking with ENvironment SeLection
by: Ulzee An, et al.
Published: (2022-10-01) -
Principal Component Analyses (PCA)-based findings in population genetic studies are highly biased and must be reevaluated
by: Eran Elhaik
Published: (2022-08-01) -
ColorPCA: Scalable Colored Dimensionality Reduction for Unlabeled High-Dimensional Data
by: Wenqiang Cui, et al.
Published: (2025-01-01) -
Computing feature matrices using PCA-SVD hybrid method on small-scale systems
by: Le Tien Hung, et al.
Published: (2024-12-01)
