Self-driving microscopy detects the onset of protein aggregation and enables intelligent Brillouin imaging

Abstract The process of protein aggregation, central to neurodegenerative diseases like Huntington’s, is challenging to study due to its unpredictable nature and relatively rapid kinetics. Understanding its biomechanics is crucial for unraveling its role in disease progression and cellular toxicity....

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出版年:Nature Communications
主要な著者: Khalid A. Ibrahim, Camille Cathala, Carlo Bevilacqua, Lely Feletti, Robert Prevedel, Hilal A. Lashuel, Aleksandra Radenovic
フォーマット: 論文
言語:英語
出版事項: Nature Portfolio 2025-07-01
オンライン・アクセス:https://doi.org/10.1038/s41467-025-60912-0
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author Khalid A. Ibrahim
Camille Cathala
Carlo Bevilacqua
Lely Feletti
Robert Prevedel
Hilal A. Lashuel
Aleksandra Radenovic
author_facet Khalid A. Ibrahim
Camille Cathala
Carlo Bevilacqua
Lely Feletti
Robert Prevedel
Hilal A. Lashuel
Aleksandra Radenovic
author_sort Khalid A. Ibrahim
collection DOAJ
container_title Nature Communications
description Abstract The process of protein aggregation, central to neurodegenerative diseases like Huntington’s, is challenging to study due to its unpredictable nature and relatively rapid kinetics. Understanding its biomechanics is crucial for unraveling its role in disease progression and cellular toxicity. Brillouin microscopy offers unique advantages for studying biomechanical properties, yet is limited by slow imaging speed, complicating its use for rapid and dynamic processes like protein aggregation. To overcome these limitations, we developed a self-driving microscope that uses deep learning to predict the onset of aggregation from a single fluorescence image of soluble protein, achieving 91% accuracy. The system triggers optimized multimodal imaging when aggregation is imminent, enabling intelligent Brillouin microscopy of this dynamic biomechanical process. Furthermore, we demonstrate that by detecting mature aggregates in real time using brightfield images and a neural network, Brillouin microscopy can be used to study their biomechanical properties without the need for fluorescence labeling, minimizing phototoxicity and preserving sample health. This autonomous microscopy approach advances the study of aggregation kinetics and biomechanics in living cells, offering a powerful tool for investigating the role of protein misfolding and aggregation in neurodegeneration.
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spelling doaj-art-e7a0a626ef6544f3bfafc91792d23eca2025-08-20T04:03:06ZengNature PortfolioNature Communications2041-17232025-07-0116111010.1038/s41467-025-60912-0Self-driving microscopy detects the onset of protein aggregation and enables intelligent Brillouin imagingKhalid A. Ibrahim0Camille Cathala1Carlo Bevilacqua2Lely Feletti3Robert Prevedel4Hilal A. Lashuel5Aleksandra Radenovic6Laboratory of Nanoscale Biology, École Polytechnique Fédérale de Lausanne (EPFL)Laboratory of Nanoscale Biology, École Polytechnique Fédérale de Lausanne (EPFL)Cell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL)Laboratory of Nanoscale Biology, École Polytechnique Fédérale de Lausanne (EPFL)Cell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL)Laboratory of Molecular and Chemical Biology of Neurodegeneration, École Polytechnique Fédérale de Lausanne (EPFL)Laboratory of Nanoscale Biology, École Polytechnique Fédérale de Lausanne (EPFL)Abstract The process of protein aggregation, central to neurodegenerative diseases like Huntington’s, is challenging to study due to its unpredictable nature and relatively rapid kinetics. Understanding its biomechanics is crucial for unraveling its role in disease progression and cellular toxicity. Brillouin microscopy offers unique advantages for studying biomechanical properties, yet is limited by slow imaging speed, complicating its use for rapid and dynamic processes like protein aggregation. To overcome these limitations, we developed a self-driving microscope that uses deep learning to predict the onset of aggregation from a single fluorescence image of soluble protein, achieving 91% accuracy. The system triggers optimized multimodal imaging when aggregation is imminent, enabling intelligent Brillouin microscopy of this dynamic biomechanical process. Furthermore, we demonstrate that by detecting mature aggregates in real time using brightfield images and a neural network, Brillouin microscopy can be used to study their biomechanical properties without the need for fluorescence labeling, minimizing phototoxicity and preserving sample health. This autonomous microscopy approach advances the study of aggregation kinetics and biomechanics in living cells, offering a powerful tool for investigating the role of protein misfolding and aggregation in neurodegeneration.https://doi.org/10.1038/s41467-025-60912-0
spellingShingle Khalid A. Ibrahim
Camille Cathala
Carlo Bevilacqua
Lely Feletti
Robert Prevedel
Hilal A. Lashuel
Aleksandra Radenovic
Self-driving microscopy detects the onset of protein aggregation and enables intelligent Brillouin imaging
title Self-driving microscopy detects the onset of protein aggregation and enables intelligent Brillouin imaging
title_full Self-driving microscopy detects the onset of protein aggregation and enables intelligent Brillouin imaging
title_fullStr Self-driving microscopy detects the onset of protein aggregation and enables intelligent Brillouin imaging
title_full_unstemmed Self-driving microscopy detects the onset of protein aggregation and enables intelligent Brillouin imaging
title_short Self-driving microscopy detects the onset of protein aggregation and enables intelligent Brillouin imaging
title_sort self driving microscopy detects the onset of protein aggregation and enables intelligent brillouin imaging
url https://doi.org/10.1038/s41467-025-60912-0
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