MIRU-profiler: a rapid tool for determination of 24-loci MIRU-VNTR profiles from assembled genomes of Mycobacterium tuberculosis
Background Tuberculosis (TB) resulted in an estimated 1.7 million deaths in the year 2016. The disease is caused by the members of Mycobacterium tuberculosis complex, which includes Mycobacterium tuberculosis, Mycobacterium bovis and other closely related TB causing organisms. In order to understand...
| Published in: | PeerJ |
|---|---|
| Main Authors: | Rahim Rajwani, Sheeba Shehzad, Gilman Kit Hang Siu |
| Format: | Article |
| Language: | English |
| Published: |
PeerJ Inc.
2018-07-01
|
| Subjects: | |
| Online Access: | https://peerj.com/articles/5090.pdf |
Similar Items
Mycobacterium Tuberculosis Genotyping Using
MIRU-VNTR Typing
by: Taher Azimi, et al.
Published: (2017-06-01)
by: Taher Azimi, et al.
Published: (2017-06-01)
Determination of circulating Mycobacterium tuberculosis strains and transmission patterns among TB patients in Iran, using 15 loci MIRU-VNTR
by: S Zamani, et al.
Published: (2015-01-01)
by: S Zamani, et al.
Published: (2015-01-01)
Mycobacterium tuberculosis genotyping by MIRU-VNTR method
by: Ahmadi M, et al.
Published: (2015-03-01)
by: Ahmadi M, et al.
Published: (2015-03-01)
Comparison of Mycobacterium tuberculosis Beijing genotype with other Mycobacterium tuberculosis strains Using MIRU-VNTR method
by: Mohaddese Mozafari, et al.
Published: (2012-04-01)
by: Mohaddese Mozafari, et al.
Published: (2012-04-01)
Genetic diversity of Mycobacterium tuberculosis using 24-locus MIRU-VNTR typing and Spoligotyping in Upper Myanmar
by: Waing Waing Moe Sann, et al.
Published: (2020-11-01)
by: Waing Waing Moe Sann, et al.
Published: (2020-11-01)
Genetic diversity of multidrug-resistant Mycobacterium tuberculosis strains isolated from tuberculosis patients in Iran using MIRU-VNTR technique
by: Azar Dokht Khosravi, et al.
Published: (2017-11-01)
by: Azar Dokht Khosravi, et al.
Published: (2017-11-01)
Molecular Epidemiology of Clinical Mycobacterium tuberculosis Isolates from Southern Xinjiang, China Using Spoligotyping and 15-Locus MIRU-VNTR Typing
by: Yin C, et al.
Published: (2023-03-01)
by: Yin C, et al.
Published: (2023-03-01)
A quantitative and efficient approach to select MIRU–VNTR loci based on accumulation of the percentage differences of strains for discriminating divergent Mycobacterium tuberculosis sublineages
by: Xin-Ling Pan, et al.
Published: (2017-01-01)
by: Xin-Ling Pan, et al.
Published: (2017-01-01)
MIRU-VNTR Typing of Atypical Mycobacteria Isolated from the Lymph Nodes of Slaughtered Pigs from Poland
by: Marta Majchrzak, et al.
Published: (2022-04-01)
by: Marta Majchrzak, et al.
Published: (2022-04-01)
Efficient discrimination by MIRU-VNTRs of Mycobacterium tuberculosis clinical isolates belonging to the predominant SIT11/EAI3-IND ancestral genotypic lineage in Kerala, India
by: Biljo V Joseph, et al.
Published: (2013-01-01)
by: Biljo V Joseph, et al.
Published: (2013-01-01)
Snapshot of the genetic diversity of Mycobacterium tuberculosis isolates in Iraq
by: Mohanad Mohsin Ahmed, et al.
Published: (2014-01-01)
by: Mohanad Mohsin Ahmed, et al.
Published: (2014-01-01)
Phylogeorgaphy of Mycobacterium tuberculosis in central and border Mongolia
by: E. A. Orlova, et al.
Published: (2017-09-01)
by: E. A. Orlova, et al.
Published: (2017-09-01)
Dynamics of <i>Mycobacterium tuberculosis</i> Lineages in Oman, 2009 to 2018
by: Sara Al-Mahrouqi, et al.
Published: (2022-05-01)
by: Sara Al-Mahrouqi, et al.
Published: (2022-05-01)
High diversity of multidrug-resistant Mycobacterium tuberculosis Central Asian Strain isolates in Nepal
by: Yogendra Shah, et al.
Published: (2017-10-01)
by: Yogendra Shah, et al.
Published: (2017-10-01)
Genetic profiles of Mycobacterium bovis from a cattle herd in southernmost Brazil
by: Antonio Francisco de Souza Filho, et al.
Published: (2016-11-01)
by: Antonio Francisco de Souza Filho, et al.
Published: (2016-11-01)
Molecular typing of Mycobacterium bovis isolated in the first outbreak of bovine tuberculosis in the Azores Islands: a case report
by: F. Matos, et al.
Published: (2010-03-01)
by: F. Matos, et al.
Published: (2010-03-01)
The mutation rate of rpoB gene showed an upward trend with the increase of MIRU10, MIRU39 and QUB4156 repetitive number
by: Fan Su, et al.
Published: (2023-01-01)
by: Fan Su, et al.
Published: (2023-01-01)
Population structure and antibiotic resistance profiles of Mycobacterium tuberculosis isolates from Ibadan, Nigeria (2019–2020): a pilot study to improve affordable molecular diagnostic tools
by: Elsy Carvajal, et al.
Published: (2025-09-01)
by: Elsy Carvajal, et al.
Published: (2025-09-01)
Molecular epidemiology and drug resistance of Mycobacterium tuberculosis in a tertiary care hospital in northeastern Mexico
by: Amador Flores-Aréchiga, et al.
Published: (2023-12-01)
by: Amador Flores-Aréchiga, et al.
Published: (2023-12-01)
A first insight into tuberculosis transmission at the border of Ecuador and Colombia: a retrospective study of the population structure of Mycobacterium tuberculosis in Esmeraldas province
by: Bernardo Castro-Rodriguez, et al.
Published: (2024-02-01)
by: Bernardo Castro-Rodriguez, et al.
Published: (2024-02-01)
Clinical data and molecular analysis of Mycobacterium tuberculosi isolates from drug-resistant tuberculosis patients in Goiás, Brazil
by: Sueli Lemes de Ávila Alves, et al.
Published: (2011-09-01)
by: Sueli Lemes de Ávila Alves, et al.
Published: (2011-09-01)
Genetic diversity assessment of Tunisian Mycobacterium bovis population isolated from cattle
by: Saif Eddine Djemal, et al.
Published: (2017-12-01)
by: Saif Eddine Djemal, et al.
Published: (2017-12-01)
Multilocus VNTR analysis of Mycobacterium ulcerans strains isolated in Côte d’Ivoire
by: Grossmann Marie-David Coulibaly-N´Golo, et al.
Published: (2010-10-01)
by: Grossmann Marie-David Coulibaly-N´Golo, et al.
Published: (2010-10-01)
Genetic diversity and antibiotic resistance of Mycobacterium bovis in bovines in the Delta area of Egypt
by: Mohamed Sabry A. Elsayed, et al.
Published: (2025-09-01)
by: Mohamed Sabry A. Elsayed, et al.
Published: (2025-09-01)
Population structure of Mycobacterium tuberculosis in El Oro: A first insight into Ecuador-Peru tuberculosis transmission
by: Bernardo Castro-Rodriguez, et al.
Published: (2024-03-01)
by: Bernardo Castro-Rodriguez, et al.
Published: (2024-03-01)
Prevalence, drug resistance, and genotypic diversity of the RDRio subfamily of Mycobacterium tuberculosis in Ecuador: a retrospective analysis for years 2012–2016
by: Bernardo Castro-Rodriguez, et al.
Published: (2024-04-01)
by: Bernardo Castro-Rodriguez, et al.
Published: (2024-04-01)
Spoligotyping and variable number tandem repeat analysis of Mycobacterium bovis isolates from cattle in Brazil
by: Patrícia Martins Parreiras, et al.
Published: (2012-02-01)
by: Patrícia Martins Parreiras, et al.
Published: (2012-02-01)
Molecular epidemiology of Mycobacterium tuberculosis in Brazil before the whole genome sequencing era: a literature review
by: Emilyn Costa Conceição, et al.
Published: (2021-03-01)
by: Emilyn Costa Conceição, et al.
Published: (2021-03-01)
The shortcut of mycobacterial interspersed repetitive unit-variable number tandem repeat typing for Mycobacterium tuberculosis differentiation
by: Shima Hadifar, et al.
Published: (2022-09-01)
by: Shima Hadifar, et al.
Published: (2022-09-01)
Genomic Characterization of the Vaccinal Strain of Mycobacterium Avium Subspecies Paratuberculosis (MAP) 316F by MIRU-VNTR
by: Zahra Ebrahim, et al.
Published: (2015-10-01)
by: Zahra Ebrahim, et al.
Published: (2015-10-01)
Molecular Characterisation of <i>Mycobacterium bovis</i> Isolates from Cattle Slaughtered in Adamawa and Gombe States, North-Eastern Nigeria
by: Sadiq Mohammed Damina, et al.
Published: (2023-07-01)
by: Sadiq Mohammed Damina, et al.
Published: (2023-07-01)
Evaluation of Genetic Pattern of Non-Tuberculosis Mycobacterium Using VNTR Method
by: Noorozi J, et al.
Published: (2011-06-01)
by: Noorozi J, et al.
Published: (2011-06-01)
Distribution and Clonality of drug-resistant tuberculosis in South Africa
by: Halima Said, et al.
Published: (2021-05-01)
by: Halima Said, et al.
Published: (2021-05-01)
SPECIFIC GENETIC FEATURES OF TUBERCULOUS MYCOBACTERIA IN URAL FEDERAL DISTRICT OF RUSSIA
by: T. V. Umpeleva, et al.
Published: (2016-08-01)
by: T. V. Umpeleva, et al.
Published: (2016-08-01)
GENETIC POLYMORPHISM OF MYCOBACTERIUM TUBERCULOSIS IN PATIENTS WITH TUBERCULOSIS AND HUMAN IMMUNODEFICIENCY VIRUS INFECTION IN EASTEN SIBERIA
by: S. N. Zhdanova, et al.
Published: (2012-09-01)
by: S. N. Zhdanova, et al.
Published: (2012-09-01)
INVESTIGATION PHYLOGENETIC RELATIONSHIPS MAJOR GENOTYPES MYCOBACTERIUM TUBERCULOSIS BY MIRU-VNTR-24 GENOTYPING
by: A. A. Lats, et al.
Published: (2013-04-01)
by: A. A. Lats, et al.
Published: (2013-04-01)
Association between the severity of histopathological lesions and Mycobacterium avium subspecies paratuberculosis (MAP) molecular diversity in cattle in southern Chile
by: Cristobal Verdugo, et al.
Published: (2023-01-01)
by: Cristobal Verdugo, et al.
Published: (2023-01-01)
MOLECULAR CHARACTERIZATION OF MYCOBACTERIUM TUBERCULOSIS STRAINS CIRCULATING IN THE URAL REGION, RUSSIA
by: T. V. Umpeleva, et al.
Published: (2014-07-01)
by: T. V. Umpeleva, et al.
Published: (2014-07-01)
Genotyping methods and their contributions to the study of tuberculosis dynamic in Latin America
by: Yasmin Castillos de Ibrahim das Neves, et al.
Published: (2023-11-01)
by: Yasmin Castillos de Ibrahim das Neves, et al.
Published: (2023-11-01)
En Memoria del Abuelo Sabedor Miru Púu, Una Voz Tukano del Vaupés.
by: Margarita Becerra Cano.
Published: (2007-12-01)
by: Margarita Becerra Cano.
Published: (2007-12-01)
Similar Items
-
Mycobacterium Tuberculosis Genotyping Using
MIRU-VNTR Typing
by: Taher Azimi, et al.
Published: (2017-06-01) -
Determination of circulating Mycobacterium tuberculosis strains and transmission patterns among TB patients in Iran, using 15 loci MIRU-VNTR
by: S Zamani, et al.
Published: (2015-01-01) -
Mycobacterium tuberculosis genotyping by MIRU-VNTR method
by: Ahmadi M, et al.
Published: (2015-03-01) -
Comparison of Mycobacterium tuberculosis Beijing genotype with other Mycobacterium tuberculosis strains Using MIRU-VNTR method
by: Mohaddese Mozafari, et al.
Published: (2012-04-01) -
Genetic diversity of Mycobacterium tuberculosis using 24-locus MIRU-VNTR typing and Spoligotyping in Upper Myanmar
by: Waing Waing Moe Sann, et al.
Published: (2020-11-01)
