The complete chloroplast genome of the Chinese banyan tree Ficus microcarpa
Banyan tree or Ficus microcarpa is a large perennial plant with extraordinary aerial roots from the Moraceae family. In this study, the complete chloroplast genome sequence of F. microcarpa was assembled using PacBio data. The chloroplast genome size is 141,611 bp, consisting of a large single-copy...
| Published in: | Mitochondrial DNA. Part B. Resources |
|---|---|
| Main Authors: | , , , , |
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2022-03-01
|
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1993097 |
| _version_ | 1851881432221220864 |
|---|---|
| author | Enwen Lin Zhenyang Liao Xiuming Xu Xingtan Zhang Jingping Fang |
| author_facet | Enwen Lin Zhenyang Liao Xiuming Xu Xingtan Zhang Jingping Fang |
| author_sort | Enwen Lin |
| collection | DOAJ |
| container_title | Mitochondrial DNA. Part B. Resources |
| description | Banyan tree or Ficus microcarpa is a large perennial plant with extraordinary aerial roots from the Moraceae family. In this study, the complete chloroplast genome sequence of F. microcarpa was assembled using PacBio data. The chloroplast genome size is 141,611 bp, consisting of a large single-copy (LSC) region and a small single-copy (SSC) region of 101,835 bp and 9,676 bp, respectively, which are separated by a pair of 15,050 bp inverted repeat (IR) regions. The genome includes 74 protein-coding genes, 43 tRNA genes, and 8 rRNA genes. A phylogenetic tree reconstructed by 25 complete chloroplast genomes reveals that F. microcarpa is mostly related to Ficus racemosa. |
| format | Article |
| id | doaj-art-e952ea9e4e60499581feaa25e5b8ced2 |
| institution | Directory of Open Access Journals |
| issn | 2380-2359 |
| language | English |
| publishDate | 2022-03-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| spelling | doaj-art-e952ea9e4e60499581feaa25e5b8ced22025-08-19T22:13:06ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-03-017342342510.1080/23802359.2021.19930971993097The complete chloroplast genome of the Chinese banyan tree Ficus microcarpaEnwen Lin0Zhenyang Liao1Xiuming Xu2Xingtan Zhang3Jingping Fang4College of Life Sciences, Fujian Normal UniversityCenter for Genomics and Biotechnology, Fujian Agriculture and Forestry UniversityKey Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen UniversityCenter for Genomics and Biotechnology, Fujian Agriculture and Forestry UniversityCollege of Life Sciences, Fujian Normal UniversityBanyan tree or Ficus microcarpa is a large perennial plant with extraordinary aerial roots from the Moraceae family. In this study, the complete chloroplast genome sequence of F. microcarpa was assembled using PacBio data. The chloroplast genome size is 141,611 bp, consisting of a large single-copy (LSC) region and a small single-copy (SSC) region of 101,835 bp and 9,676 bp, respectively, which are separated by a pair of 15,050 bp inverted repeat (IR) regions. The genome includes 74 protein-coding genes, 43 tRNA genes, and 8 rRNA genes. A phylogenetic tree reconstructed by 25 complete chloroplast genomes reveals that F. microcarpa is mostly related to Ficus racemosa.http://dx.doi.org/10.1080/23802359.2021.1993097ficuspacbiochloroplast genomephylogenomic treemoraceae |
| spellingShingle | Enwen Lin Zhenyang Liao Xiuming Xu Xingtan Zhang Jingping Fang The complete chloroplast genome of the Chinese banyan tree Ficus microcarpa ficus pacbio chloroplast genome phylogenomic tree moraceae |
| title | The complete chloroplast genome of the Chinese banyan tree Ficus microcarpa |
| title_full | The complete chloroplast genome of the Chinese banyan tree Ficus microcarpa |
| title_fullStr | The complete chloroplast genome of the Chinese banyan tree Ficus microcarpa |
| title_full_unstemmed | The complete chloroplast genome of the Chinese banyan tree Ficus microcarpa |
| title_short | The complete chloroplast genome of the Chinese banyan tree Ficus microcarpa |
| title_sort | complete chloroplast genome of the chinese banyan tree ficus microcarpa |
| topic | ficus pacbio chloroplast genome phylogenomic tree moraceae |
| url | http://dx.doi.org/10.1080/23802359.2021.1993097 |
| work_keys_str_mv | AT enwenlin thecompletechloroplastgenomeofthechinesebanyantreeficusmicrocarpa AT zhenyangliao thecompletechloroplastgenomeofthechinesebanyantreeficusmicrocarpa AT xiumingxu thecompletechloroplastgenomeofthechinesebanyantreeficusmicrocarpa AT xingtanzhang thecompletechloroplastgenomeofthechinesebanyantreeficusmicrocarpa AT jingpingfang thecompletechloroplastgenomeofthechinesebanyantreeficusmicrocarpa AT enwenlin completechloroplastgenomeofthechinesebanyantreeficusmicrocarpa AT zhenyangliao completechloroplastgenomeofthechinesebanyantreeficusmicrocarpa AT xiumingxu completechloroplastgenomeofthechinesebanyantreeficusmicrocarpa AT xingtanzhang completechloroplastgenomeofthechinesebanyantreeficusmicrocarpa AT jingpingfang completechloroplastgenomeofthechinesebanyantreeficusmicrocarpa |