The complete chloroplast genome sequence of Altingia yunnanensis

The first complete chloroplast genome (cpDNA) sequence of Altingia yunnanensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,860 bp in length, contains a large single-copy region (LSC) of 89,162 bp and a small single-copy region (SSC) of 19,008 bp, which...

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Bibliographic Details
Published in:Mitochondrial DNA. Part B. Resources
Main Authors: Qiong Qiu, Dejun Yang, Linhong Xu, Yumei Xu, Yi Wang
Format: Article
Language:English
Published: Taylor & Francis Group 2020-01-01
Subjects:
altingia yunnanensis
chloroplast
illumina sequencing
phylogenetic analysis
Online Access:http://dx.doi.org/10.1080/23802359.2020.1721369
Description
Summary:The first complete chloroplast genome (cpDNA) sequence of Altingia yunnanensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,860 bp in length, contains a large single-copy region (LSC) of 89,162 bp and a small single-copy region (SSC) of 19,008 bp, which were separated by a pair of inverted repeat (IR) regions of 26,325 bp each. The genome contains 130 genes, including 85 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. Further, the phylogenomic analysis showed that A. yunnanensis and Altingia excelsa clustered in a clade in Saxifragales order.
ISSN:2380-2359

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