Simultaneous and rapid colorimetric detection of distinct miRNAs using Split-LAMP

Introduction: Aberrant microRNA (miRNA) expressions are often discovered in many life threatening diseases such as cancer. In particular, recent studies show combinations of miRNA levels have greater diagnostic accuracy as opposed to single miRNA levels. For point-of-care applications, rapid and sen...

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發表在:Frontiers in Bioengineering and Biotechnology
Main Authors: Yi Jing Chua, Steven Poh Chuen Sim, Medha Shridharan, Yiqi Seow
格式: Article
語言:英语
出版: Frontiers Media S.A. 2023-11-01
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在線閱讀:https://www.frontiersin.org/articles/10.3389/fbioe.2023.1271297/full
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author Yi Jing Chua
Steven Poh Chuen Sim
Medha Shridharan
Medha Shridharan
Yiqi Seow
Yiqi Seow
author_facet Yi Jing Chua
Steven Poh Chuen Sim
Medha Shridharan
Medha Shridharan
Yiqi Seow
Yiqi Seow
author_sort Yi Jing Chua
collection DOAJ
container_title Frontiers in Bioengineering and Biotechnology
description Introduction: Aberrant microRNA (miRNA) expressions are often discovered in many life threatening diseases such as cancer. In particular, recent studies show combinations of miRNA levels have greater diagnostic accuracy as opposed to single miRNA levels. For point-of-care applications, rapid and sensitive isothermal amplification with loop-mediated isothermal amplification (LAMP) has gained significant interest.Method: We developed a cost-effective point-of-care testing (POCT) device for multiple miRNAs that can integrate miRNA signals into a single output.Results and Discussion: We demonstrate that the loop primers for LAMP can be broken and be used for miRNA detection. This split-LAMP approach provides a logic AND-gate output for two distinct miRNA inputs. We then show that this is potentially useable in point-of-care testing using pH-sensitive dye to give a rapid, colorimetric endpoint readout within 30 min. This novel logic gate approach can potentially be extended to multiple miRNAs such that there can be a powerful diagnostic concept for multiple short RNAs in a point-of-care rapid test.
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publisher Frontiers Media S.A.
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spelling doaj-art-ef5c74c02a2a4ffa87b18eb3166df4472025-08-20T00:13:06ZengFrontiers Media S.A.Frontiers in Bioengineering and Biotechnology2296-41852023-11-011110.3389/fbioe.2023.12712971271297Simultaneous and rapid colorimetric detection of distinct miRNAs using Split-LAMPYi Jing Chua0Steven Poh Chuen Sim1Medha Shridharan2Medha Shridharan3Yiqi Seow4Yiqi Seow5Genome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, SingaporeInstitute of Molecular and Cell Biology, A*STAR (Agency for Science, Technology and Research), Singapore, SingaporeGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, SingaporeNUS High School of Mathematics and Science, Clementi, SingaporeGenome Institute of Singapore (GIS), Agency for Science, Technology and Research (A*STAR), Singapore, SingaporeInstitute of Molecular and Cell Biology, A*STAR (Agency for Science, Technology and Research), Singapore, SingaporeIntroduction: Aberrant microRNA (miRNA) expressions are often discovered in many life threatening diseases such as cancer. In particular, recent studies show combinations of miRNA levels have greater diagnostic accuracy as opposed to single miRNA levels. For point-of-care applications, rapid and sensitive isothermal amplification with loop-mediated isothermal amplification (LAMP) has gained significant interest.Method: We developed a cost-effective point-of-care testing (POCT) device for multiple miRNAs that can integrate miRNA signals into a single output.Results and Discussion: We demonstrate that the loop primers for LAMP can be broken and be used for miRNA detection. This split-LAMP approach provides a logic AND-gate output for two distinct miRNA inputs. We then show that this is potentially useable in point-of-care testing using pH-sensitive dye to give a rapid, colorimetric endpoint readout within 30 min. This novel logic gate approach can potentially be extended to multiple miRNAs such that there can be a powerful diagnostic concept for multiple short RNAs in a point-of-care rapid test.https://www.frontiersin.org/articles/10.3389/fbioe.2023.1271297/fullmultiplex miRNALAMPPOCTsplit-LAMPrapid colorimetric detection
spellingShingle Yi Jing Chua
Steven Poh Chuen Sim
Medha Shridharan
Medha Shridharan
Yiqi Seow
Yiqi Seow
Simultaneous and rapid colorimetric detection of distinct miRNAs using Split-LAMP
multiplex miRNA
LAMP
POCT
split-LAMP
rapid colorimetric detection
title Simultaneous and rapid colorimetric detection of distinct miRNAs using Split-LAMP
title_full Simultaneous and rapid colorimetric detection of distinct miRNAs using Split-LAMP
title_fullStr Simultaneous and rapid colorimetric detection of distinct miRNAs using Split-LAMP
title_full_unstemmed Simultaneous and rapid colorimetric detection of distinct miRNAs using Split-LAMP
title_short Simultaneous and rapid colorimetric detection of distinct miRNAs using Split-LAMP
title_sort simultaneous and rapid colorimetric detection of distinct mirnas using split lamp
topic multiplex miRNA
LAMP
POCT
split-LAMP
rapid colorimetric detection
url https://www.frontiersin.org/articles/10.3389/fbioe.2023.1271297/full
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AT stevenpohchuensim simultaneousandrapidcolorimetricdetectionofdistinctmirnasusingsplitlamp
AT medhashridharan simultaneousandrapidcolorimetricdetectionofdistinctmirnasusingsplitlamp
AT medhashridharan simultaneousandrapidcolorimetricdetectionofdistinctmirnasusingsplitlamp
AT yiqiseow simultaneousandrapidcolorimetricdetectionofdistinctmirnasusingsplitlamp
AT yiqiseow simultaneousandrapidcolorimetricdetectionofdistinctmirnasusingsplitlamp