Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons
We examined the effect of different soil sample sizes obtained from an agricultural field, under a single cropping system uniform in soil properties and aboveground crop responses, on bacterial and fungal community structure and microbial diversity indices. DNA extracted from soil sample sizes of 0....
| Published in: | Frontiers in Microbiology |
|---|---|
| Main Authors: | Christopher Ryan Penton, V.S.R Gupta Vadakattu, Julian eYu, James M. Tiedje |
| Format: | Article |
| Language: | English |
| Published: |
Frontiers Media S.A.
2016-06-01
|
| Subjects: | |
| Online Access: | http://journal.frontiersin.org/Journal/10.3389/fmicb.2016.00824/full |
Similar Items
Seasonal and Site-Specific Patterns of Airborne Fungal Diversity Revealed Using Passive Spore Traps and High-Throughput DNA Sequencing
by: Adas Marčiulynas, et al.
Published: (2023-04-01)
by: Adas Marčiulynas, et al.
Published: (2023-04-01)
Pathogenesis and Clinical Features of Fungal Keratitis (Review)
by: K. I. Belskaia, et al.
Published: (2021-04-01)
by: K. I. Belskaia, et al.
Published: (2021-04-01)
Larvicidal and Immunomodulatory Effects of Conidia and Blastospores of <i>Beauveria bassiana</i> and <i>Beauveria brongniartii</i> in <i>Aedes aegypti</i>
by: José L. Ramirez, et al.
Published: (2025-08-01)
by: José L. Ramirez, et al.
Published: (2025-08-01)
Microbial dark matter sequences verification in amplicon sequencing and environmental metagenomics data
by: Hana Barak, et al.
Published: (2023-11-01)
by: Hana Barak, et al.
Published: (2023-11-01)
Management of Filamentous Fungal Keratitis: A Pragmatic Approach
by: Jeremy J. Hoffman, et al.
Published: (2022-10-01)
by: Jeremy J. Hoffman, et al.
Published: (2022-10-01)
The Influence of Oral Terbinafine on Gut Fungal Microbiome Composition and Microbial Translocation in People Living with HIV Treated for Onychomycosis
by: Jing Ouyang, et al.
Published: (2023-09-01)
by: Jing Ouyang, et al.
Published: (2023-09-01)
The Grapevine and Wine Microbiome: Insights from High-Throughput Amplicon Sequencing
by: Horatio H. Morgan, et al.
Published: (2017-05-01)
by: Horatio H. Morgan, et al.
Published: (2017-05-01)
Schizophyllum Commune- A Rare Cause of Fungal Keratitis- Case Report and Review of Literature
by: Parvatha Sundari Nataraja, et al.
Published: (2024-06-01)
by: Parvatha Sundari Nataraja, et al.
Published: (2024-06-01)
Changes in grassland soil types lead to different characteristics of bacterial and fungal communities in Northwest Liaoning, China
by: Xinwei Ma, et al.
Published: (2023-06-01)
by: Xinwei Ma, et al.
Published: (2023-06-01)
NG-Tax, a highly accurate and validated pipeline for analysis of 16S rRNA amplicons from complex biomes [version 2; referees: 2 approved, 1 approved with reservations, 1 not approved]
by: Javier Ramiro-Garcia, et al.
Published: (2018-11-01)
by: Javier Ramiro-Garcia, et al.
Published: (2018-11-01)
Association between fungal dysbiosis in the first 1 000 days of life and childhood diseases – a review of research progress
by: Xiaoyan ZHANG, et al.
Published: (2024-07-01)
by: Xiaoyan ZHANG, et al.
Published: (2024-07-01)
Alterations in ocular fungal microbiota in patients with fungal keratitis: a comparative study from coastal regions of Eastern China
by: Xudong Zhao, et al.
Published: (2025-05-01)
by: Xudong Zhao, et al.
Published: (2025-05-01)
Urban biogeography of fungal endophytes across San Francisco
by: Emma Gibson, et al.
Published: (2023-07-01)
by: Emma Gibson, et al.
Published: (2023-07-01)
Use of trypan blue dye for diagnosing fungal filaments
by: Hardik Kalaria, et al.
Published: (2025-01-01)
by: Hardik Kalaria, et al.
Published: (2025-01-01)
Analysis of surfaces for characterization of fungal burden – Does it matter?
by: Carla Viegas, et al.
Published: (2016-08-01)
by: Carla Viegas, et al.
Published: (2016-08-01)
Adding glucose combined with microalgae to water improves the benefits of the fungal community on the whiteleg shrimp (Litopenaeus vannamei) culture
by: Bilal Raza, et al.
Published: (2025-03-01)
by: Bilal Raza, et al.
Published: (2025-03-01)
Fungal-bacterial consortia: A promising strategy for the removal of petroleum hydrocarbons
by: Zeinab Rezaei, et al.
Published: (2024-07-01)
by: Zeinab Rezaei, et al.
Published: (2024-07-01)
Morpho-phylogenetic evidence for the first freshwater record of Trichoderma protrudens Samuels &amp; P. Chaverri (Hypocreales, Sordariomycetes)
by: Bernard Paul S. Dangallo, et al.
Published: (2025-01-01)
by: Bernard Paul S. Dangallo, et al.
Published: (2025-01-01)
The Fungal Microbiome Is an Important Component of Vineyard Ecosystems and Correlates with Regional Distinctiveness of Wine
by: Di Liu, et al.
Published: (2020-08-01)
by: Di Liu, et al.
Published: (2020-08-01)
A Simple High-Throughput Technology for Microorganism Detection and Quantitative Analysis
by: Liping Wang, et al.
Published: (2024-09-01)
by: Liping Wang, et al.
Published: (2024-09-01)
Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons
by: Ilias Lagkouvardos, et al.
Published: (2017-01-01)
by: Ilias Lagkouvardos, et al.
Published: (2017-01-01)
Association between in vitro susceptibility and clinical outcomes in fungal keratitis
by: Louisa Lu, et al.
Published: (2024-09-01)
by: Louisa Lu, et al.
Published: (2024-09-01)
Glycolytic activities in size-fractionated water samples: emphasis on rhamnosidase, arabinosidase and fucosidase activities
by: Vanessa Colombo-Corbi, et al.
Published: (2011-06-01)
by: Vanessa Colombo-Corbi, et al.
Published: (2011-06-01)
Biases in Prokaryotic Community Amplicon Sequencing Affected by DNA Extraction Methods in Both Saline and Non-saline Soil
by: Kehui Xie, et al.
Published: (2018-08-01)
by: Kehui Xie, et al.
Published: (2018-08-01)
The Colonization of Synthetic Microbial Communities Carried by Bio-Organic Fertilizers in Continuous Cropping Soil for Potato Plants
by: Wenming Zhang, et al.
Published: (2024-11-01)
by: Wenming Zhang, et al.
Published: (2024-11-01)
Rock substrate rather than black stain alterations drives microbial community structure in the passage of Lascaux Cave
by: Lise Alonso, et al.
Published: (2018-12-01)
by: Lise Alonso, et al.
Published: (2018-12-01)
Fabricated devices for performing bacterial-fungal interaction experiments across scales
by: Julia M. Kelliher, et al.
Published: (2024-08-01)
by: Julia M. Kelliher, et al.
Published: (2024-08-01)
Recent Approaches towards Control of Fungal Diseases in Plants: An Updated Review
by: Nawal Abd El-Baky, et al.
Published: (2021-10-01)
by: Nawal Abd El-Baky, et al.
Published: (2021-10-01)
Advances and Perspectives in the Use of Biocontrol Agents against Fungal Plant Diseases
by: Davide Palmieri, et al.
Published: (2022-06-01)
by: Davide Palmieri, et al.
Published: (2022-06-01)
The Fungal Community Structure Regulates Elevational Variations in Soil Organic Carbon Fractions in a Wugong Mountain Meadow
by: Jinping Wang, et al.
Published: (2024-11-01)
by: Jinping Wang, et al.
Published: (2024-11-01)
Diagnosis of Fungal Keratitis in Low-Income Countries: Evaluation of Smear Microscopy, Culture, and In Vivo Confocal Microscopy in Nepal
by: Jeremy J. Hoffman, et al.
Published: (2022-09-01)
by: Jeremy J. Hoffman, et al.
Published: (2022-09-01)
Cover Cropping Increases Soil Fungal-Bacterial Community Diversity and Network Complexity in Apple Orchards on the Loess Plateau, China
by: Chong-Yi Liu, et al.
Published: (2022-05-01)
by: Chong-Yi Liu, et al.
Published: (2022-05-01)
Carbon and Nutrients from Organic Residues Modulate the Dynamics of Prokaryotic and Fungal Communities
by: Késia Silva Lourenço, et al.
Published: (2023-12-01)
by: Késia Silva Lourenço, et al.
Published: (2023-12-01)
Timing of Resource Addition Affects the Migration Behavior of Wood Decomposer Fungal Mycelia
by: Yu Fukasawa, et al.
Published: (2021-08-01)
by: Yu Fukasawa, et al.
Published: (2021-08-01)
Antibacterial and antifungal activity of curcumin and methylene blue associated with laser on bacterial and fungal strains
by: Brenda Ellen Meneses Cardoso, et al.
Published: (2023-12-01)
by: Brenda Ellen Meneses Cardoso, et al.
Published: (2023-12-01)
Clinical differentiation of Pythium keratitis from fungal keratitis and development of a scoring system
by: Samrat Chatterjee, et al.
Published: (2022-01-01)
by: Samrat Chatterjee, et al.
Published: (2022-01-01)
Metagenomic Next-Generation Sequencing (mNGS) Data Reveal the Phyllosphere Microbiome of Wheat Plants Infected by the Fungal Pathogen Zymoseptoria tritici
by: Didac Barroso-Bergadà, et al.
Published: (2023-09-01)
by: Didac Barroso-Bergadà, et al.
Published: (2023-09-01)
Effects of Tillage and Winter Cover Management in a Maize Soybean Rotation on Soil Bacterial and Fungal Community Composition
by: Nisarga Kodadinne Narayana, et al.
Published: (2022-12-01)
by: Nisarga Kodadinne Narayana, et al.
Published: (2022-12-01)
Metagenomic 16S rRNA amplicon data of gut microbial diversity in three species of subterranean termites (Coptotermes gestroi, Globitermes sulphureus and Macrotermes gilvus)
by: Qurratu'Aini Syasya Shamsuri, et al.
Published: (2023-04-01)
by: Qurratu'Aini Syasya Shamsuri, et al.
Published: (2023-04-01)
A comparative study of sampling methods in the detection of esophageal cancer-related microbiota
by: Xia Xue, et al.
Published: (2024-08-01)
by: Xia Xue, et al.
Published: (2024-08-01)
Similar Items
-
Seasonal and Site-Specific Patterns of Airborne Fungal Diversity Revealed Using Passive Spore Traps and High-Throughput DNA Sequencing
by: Adas Marčiulynas, et al.
Published: (2023-04-01) -
Pathogenesis and Clinical Features of Fungal Keratitis (Review)
by: K. I. Belskaia, et al.
Published: (2021-04-01) -
Larvicidal and Immunomodulatory Effects of Conidia and Blastospores of <i>Beauveria bassiana</i> and <i>Beauveria brongniartii</i> in <i>Aedes aegypti</i>
by: José L. Ramirez, et al.
Published: (2025-08-01) -
Microbial dark matter sequences verification in amplicon sequencing and environmental metagenomics data
by: Hana Barak, et al.
Published: (2023-11-01) -
Management of Filamentous Fungal Keratitis: A Pragmatic Approach
by: Jeremy J. Hoffman, et al.
Published: (2022-10-01)
