Search Results - "Spatial transcriptomics"

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  1. 1

    A Human Immuno‐Lung Organoid Model to Study Macrophage‐Mediated Lung Cell Senescence Upon SARS‐CoV‐2 Infection by Yuling Han, Dongliang Leng, Tuo Zhang, Jian Ge, Yinshan Fang, Tiankun Lu, Xue Dong, Manoj S Nair, Neranjan deSilva, Zhaowei Han, Tiancheng Jiao, Yuanhao Huang, Meiqi Zhao, Anjali Saqi, Hanina Hibshoosh, Zihe Meng, Jenny Z Xiang, Chendong Pan, Yanjie Sun, David D. Ho, Todd Evans, Jie Liu, Liuliu Yang, Jianwen Que, Shuibing Chen

    Published in Advanced Science (2025-09-01)
    Subjects: “…spatial transcriptomics…”
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    Article


  2. 2

    Automation of Spatial Transcriptomics library preparation to enable rapid and robust insights into spatial organization of tissues by Emelie Berglund, Sami Saarenpää, Anders Jemt, Joel Gruselius, Ludvig Larsson, Ludvig Bergenstråhle, Joakim Lundeberg, Stefania Giacomello

    Published in BMC Genomics (2020-04-01)
    Subjects: “…Spatial transcriptomics…”
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  3. 3

    Detection of allele-specific expression in spatial transcriptomics with spASE by Luli S. Zou, Dylan M. Cable, Irving A. Barrera-Lopez, Tongtong Zhao, Evan Murray, Martin J. Aryee, Fei Chen, Rafael A. Irizarry

    Published in Genome Biology (2024-07-01)
    Subjects: “…Spatial transcriptomics…”
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  4. 4

    Multimodal sequencing of neoadjuvant nivolumab treatment in hepatocellular carcinoma reveals cellular and molecular immune landscape for drug response by Fanhong Zeng, Qingyang Zhang, Yu-Man Tsui, Huanhuan Ma, Lu Tian, Abdullah Husain, Jingyi Lu, Joyce Man-Fong Lee, Vanilla Xin Zhang, Po-Man Li, Gary Cheuk-Hang Cheung, Tan-To Cheung, Daniel Wai-Hung Ho, Irene Oi-Lin Ng

    Published in Molecular Cancer (2025-04-01)
    Subjects: “…Spatial transcriptomics…”
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  5. 5

    Microglia networks within the tapestry of alzheimer’s disease through spatial transcriptomics by Yi Zhou, Christopher K. Glass

    Published in Molecular Neurodegeneration (2025-09-01)
    Subjects: “…Spatial transcriptomics…”
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  6. 6

    Advances in spatial transcriptomics and related data analysis strategies by Jun Du, Yu-Chen Yang, Zhi-Jie An, Ming-Hui Zhang, Xue-Hang Fu, Zou-Fang Huang, Ye Yuan, Jian Hou

    Published in Journal of Translational Medicine (2023-05-01)
    Subjects: “…Spatial transcriptomics…”
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  7. 7

    Molecular stratification of the human fetal vaginal epithelium by spatial transcriptome analysis by Ye Ziying, Jiang Peipei, Zhu Qi, Pei Zhongrui, Hu Yali, Zhao Guangfeng

    Published in Acta Biochimica et Biophysica Sinica (2024-04-01)
    Subjects: “…spatial transcriptomics…”
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  8. 8

    Spatial Transcriptomics: Technical Aspects of Recent Developments and Their Applications in Neuroscience and Cancer Research by Han‐Eol Park, Song Hyun Jo, Rosalind H. Lee, Christian P. Macks, Taeyun Ku, Jihwan Park, Chung Whan Lee, Junho K. Hur, Chang Ho Sohn

    Published in Advanced Science (2023-06-01)
    Subjects: “…spatial transcriptomics…”
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  9. 9

    Advances in spatial transcriptomics and its applications in cancer research by Yang Jin, Yuanli Zuo, Gang Li, Wenrong Liu, Yitong Pan, Ting Fan, Xin Fu, Xiaojun Yao, Yong Peng

    Published in Molecular Cancer (2024-06-01)
    Subjects: “…Spatial transcriptomics…”
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  10. 10

    TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data by Nicolas Pielawski, Axel Andersson, Christophe Avenel, Andrea Behanova, Eduard Chelebian, Anna Klemm, Fredrik Nysjö, Leslie Solorzano, Carolina Wählby

    Published in Heliyon (2023-05-01)
    Subjects: “…Spatial transcriptomics…”
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    Article


  11. 11

    Cell type census in cerebral cortex reveals species-specific brain function and connectivity by Kohei Onishi, Tomomi Shimogori

    Published in Neuroscience Research (2025-05-01)
    Subjects: “…Spatial transcriptomics…”
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    Article


  12. 12

    From Invaginating Site to Deep Lesion: Spatial Transcriptomics Unravels Ectopic Endometrial Penetration Features in Adenomyosis by Boyu Li, Jia Qi, Yumeng Cao, Yijing Long, Zhe Wei, Wang‐Sheng Wang, Shuanggang Hu, Yuan Wang, Qinling Zhu, Xiao Hu, Zhe Sun, Jie Zhu, Taiyang Ye, Yejie Yao, Yiwen Meng, Xuejiao Bian, Xinyi Dong, Hengyu Guan, Yunfei Huang, Yun Sun

    Published in Advanced Science (2025-05-01)
    Subjects: “…spatial transcriptomics…”
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  13. 13

    Spatial transcriptomics reveal basal sex differences in supraoptic nucleus gene expression of adult rats related to cell signaling and ribosomal pathways by Dianna H. Nguyen, Victor Duque, Nicole Phillips, André Souza Mecawi, J. Thomas Cunningham

    Published in Biology of Sex Differences (2023-10-01)
    Subjects: “…Spatial transcriptomics…”
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  14. 14

    Spatial Profiles in Triple-negative Breast Cancer: Unraveling the Tumor Microenvironment and Biomarkers for Immune Checkpoint Inhibitors by Cheng-Han Wu, Yu-Chiao Chiu

    Published in Journal of Cancer Research and Practice (2024-06-01)
    Subjects: “…spatial transcriptomics…”
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  15. 15

    InSituCor: exploring spatially correlated genes conditional on the cell type landscape by Patrick Danaher, Dan McGuire, Lidan Wu, Michael Patrick, David Kroeppler, Haiyan Zhai, Deniz G. Olgun, Dennis Gong, Jingyi Cao, William L. Hwang, Joachim Schmid, Joseph M. Beechem

    Published in Genome Biology (2025-04-01)
    Subjects: “…Spatial transcriptomics…”
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    Article


  16. 16

    Spatial transcriptome reveals the region-specific genes and pathways regulated by Satb2 in neocortical development by Jianfen Yang, Yu Li, Yiyuli Tang, Ling Yang, Chunming Guo, Cheng Peng

    Published in BMC Genomics (2024-08-01)
    Subjects: “…Spatial transcriptomics…”
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    Article


  17. 17

    Gene count normalization in single-cell imaging-based spatially resolved transcriptomics by Lyla Atta, Kalen Clifton, Manjari Anant, Gohta Aihara, Jean Fan

    Published in Genome Biology (2024-06-01)
    Subjects: “…Spatial transcriptomics…”
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  18. 18

    Single-cell and spatial transcriptomics reveal metastasis mechanism and microenvironment remodeling of lymph node in osteosarcoma by Yun Liu, Mingwei He, Haijun Tang, Tianyu Xie, Yunhua Lin, Shangyu Liu, Jiming Liang, Feicui Li, Kai Luo, Mingxiu Yang, Hongcai Teng, Xiaoting Luo, Juliang He, Shijie Liao, Qian Huang, Wenyu Feng, Xinli Zhan, Qingjun Wei

    Published in BMC Medicine (2024-05-01)
    Subjects: “…Spatial transcriptomics…”
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    Article


  19. 19

    SMART: spatial transcriptomics deconvolution using marker-gene-assisted topic model by Chen Xi Yang, Don D. Sin, Raymond T. Ng

    Published in Genome Biology (2024-12-01)
    Subjects: “…Spatial transcriptomics…”
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  20. 20

    Characterizing Neonatal Heart Maturation, Regeneration, and Scar Resolution Using Spatial Transcriptomics by Adwiteeya Misra, Cameron D. Baker, Elizabeth M. Pritchett, Kimberly N. Burgos Villar, John M. Ashton, Eric M. Small

    Subjects: “…spatial transcriptomics…”
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