The Consensus Coding Sequence (Ccds) Project: Identifying a Common Protein-Coding Gene Set for the Human and Mouse Genomes

by Kellis, Manolis, Lin, Michael F.
Published 2012

GENCODE: The reference human genome annotation for The ENCODE Project

by Lin, Michael F., Kellis, Manolis
Published 2013

Disruption of a Large Intergenic Noncoding RNA in Subjects with Neurodevelopmental Disabilities

by Kellis, Manolis, Lin, Michael F.
Published 2014

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

by Lin, Michael F., Jungreis, Irwin, Kellis, Manolis
Published 2012

Comparative Functional Genomics of the Fission Yeasts

by Regev, Aviv, Kellis, Manolis, Lin, Michael F.
Published 2014

Error and Error Mitigation in Low-Coverage Genome Assemblies

by Hubisz, Melissa J., Lin, Michael F., Kellis, Manolis, Siepel, Adam
Published 2011

Evolutionary Dynamics of Abundant Stop Codon Readthrough

by Fields, Gabriel, Lin, Michael F., Jungreis, Irwin, Chan, Clara S., Waterhouse, Robert, Kellis, Manolis
Published 2017

FRESCo: finding regions of excess synonymous constraint in diverse viruses

by Lin, Michael F., Jungreis, Irwin, Kellis, Manolis, Sabeti, Pardis C, Sealfon, Rachel S., Wolf, Maxim Y.
Published 2015

Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes

by Lin, Michael F., Kheradpour, Pouya, Mag Washietl, Stefan, Parker, Brian J., Pedersen, Jakob S., Kellis, Manolis
Published 2012

Evidence of abundant stop codon readthrough in Drosophila and other Metazoa

by Jungreis, Irwin, Lin, Michael F., Spokony, Rebecca, Chan, Clara Sophia, Negre, Nicolas, Victorsen, Alec, White, Kevin P., Kellis, Manolis
Published 2012

An integrated encyclopedia of DNA elements in the human genome

by Altshuler, Robert Charles, Ernst, Jason, Kellis, Manolis, Kheradpour, Pouya, Ward, Lucas D., Eaton, Matthew Lucas, Hendrix, David A., Jungreis, Irwin, Lin, Michael F., Washietl, Stefan
Published 2014

Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters

by Hung, Tiffany, Wang, Yulei, Lin, Michael F., Koegel, Ashley K., Kotake, Yojiro, Grant, Gavin D., Horlings, Hugo M., Shah, Nilay, Umbricht, Christopher, Wang, Pei, Wang, Yu, Kong, Benjamin, Langerød, Anita, Børresen-Dale, Kim, Seung K., van de Vijver, Marc, Sukumar, Saraswati, Whitfield, Michael L., Kellis, Manolis, Xiong, Yue, Wong, David J., Chang, Howard Y., Lin, Michael F.
Published 2014

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis

by Lin, Michael F., Regev, Aviv, Pauli, Andrea, Valen, Eivind, Garber, Manuel, Vastenhouw, Nadine L., Levin, Joshua Z., Fan, Lin, Sandelin, Albin, Rinn, John L., Schier, Alexander F.
Published 2012

Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

by Kheradpour, Pouya, Bristow, Christopher A., Mag Washietl, Stefan, Ay, Ferhat, Jungreis, Irwin, Marbach, Daniel, Sealfon, Rachel Sima, Will, Sebastian, Berger, Bonnie, Kellis, Manolis, Roy, Sushmita, Ernst, Jason, Lin, Michael F., Meyer, Patrick E., Di Stefano, Luisa, Candeias, Rogerio, Nordman, Jared T., Orr-Weaver, Terry L.
Published 2013

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

by Bernstein, Bradley E., Epstein, Charles B., Shoresh, Noam, Ernst, Jason, Mikkelsen, Tarjei Sigurd, Kheradpour, Pouya, Zhang, Xiaolan, Wang, Li, Issner, Robbyn, Coyne, Michael J., Durham, Timothy, Ku, Manching, Truong, Thanh, Ward, Lucas D., Altshuler, Robert Charles, Lin, Michael F., Kellis, Manolis, ENCODE Project Consortium
Published 2011

Chromatin Signature Reveals over a Thousand Highly Conserved Large Non-Coding Rnas in Mammals

by Guttman, Mitchell, Amit, Ido, Garber, Manuel, French, Courtney, Lin, Michael F., Feldser, David M., Huarte, Maite, Zuk, Or, Carey, Bryce W., Cassady, John P., Cabili, Moran N., Jaenisch, Rudolf, Jacks, Tyler E., Hacohen, Nir, Bernstein, Bradley E., Kellis, Manolis, Lander, Eric S., Mikkelsen, Tarjei Sigurd 1978-
Published 2010