Negative interactions determine Clostridioides difficile growth in synthetic human gut communities

by Amador-Noguez, D., Clark, R.L, Hromada, S., Jacobson, T.B, Qian, Y., Safdar, N., Venturelli, O.S, Watson, L.
Published 2021

Metabolic modelling reveals broad changes in gut microbial metabolism in inflammatory bowel disease patients with dysbiosis

by Heinken, A., Hertel, J., Thiele, I.
Published 2021

CANTARE: finding and visualizing network-based multi-omic predictive models

by Borengasser, S.J, Görg, C., Lozupone, C.A, Saint-Cyr, M., Siebert, J.C, Wagner, B.D
Published 2021

Inter-species Metabolic Interactions in an In-vitro Minimal Human Gut Microbiome of Core Bacteria

by Aalvink, S., Atashgahi, S., de Vos, W.M, Kuipers, B., Shetty, S.A, Smidt, H.
Published 2022

Comparative Analyses of the Transport Proteins Encoded within the Genomes of nine Bifidobacterium Species

by Saier, M.H, Zafar, H.
Published 2021

Large-scale functional network connectivity mediate the associations of gut microbiota with sleep quality and executive functions

by Cai, H., Chen, J., Liu, S., Qian, Y., Wang, C., Yu, Y., Zhang, B., Zhang, C., Zhang, S., Zhang, T., Zhao, W., Zhu, J.
Published 2021

Low molecular weight fucoidan fraction LF2 improves metabolic syndrome via up-regulating PI3K-AKT-mTOR axis and increasing the abundance of Akkermansia muciniphila in the gut micro...

by Deng, Z., Geng, L., Wang, F., Wang, J., Wu, N., Yue, Y., Zhang, Q.
Published 2021

Immunoglobulin A-specific deficiency induces spontaneous inflammation specifically in the ileum

by Adachi, T., Aida, T., Blumberg, R.S, Hirakata, S., Hirayama, K., Ishino, F., Karasuyama, H., Kawasaki, H., Kotake, K., Kumazawa, T., Miura, T., Nagaishi, T., Okamoto, R., Ono, R., Tanaka, K., Tsugawa, N., Usami, T., Watabe, T., Watanabe, M., Yamada, D., Yoshikawa, S.
Published 2022

Effect of antibiotic pretreatment on bacterial engraftment after Fecal Microbiota Transplant (FMT) in IBS-D

by Alm, E.J, Cheng, V., Iturrino, J., Kassam, Z., Kelley, J.M, Lembo, A., Nee, J., Singh, P., Smith, M.
Published 2022

Caesarean section and children’s health: A quasi-experimental design

by Fletcher, J., Polos, J.
Published 2019

BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data

by Av-Shalom, T.V, Chng, K.R, Kwah, J.S, Li, C., Nagarajan, N., Tan, J.W.G
Published 2021

Comprehensive discovery of CRISPR-targeted terminally redundant sequences in the human gut metagenome: Viruses, plasmids, and more

by Inoue, I., Ito, J., Kurokawa, K., Mori, H., Nakaoka, H., Nguyen, P.T, Nishimura, L., Parrish, N.F, Sugimoto, R.
Published 2021