Phenotyping Neurodegeneration in Human iPSCs

by Li, Jonathan, Fraenkel, Ernest
Published 2021

Characteristics of myeloproliferative neoplasms in patients exposed to ionizing radiation following the Chernobyl nuclear accident

by Adam, Miriam, Fraenkel, Ernest
Published 2020

Bioenergetic deficits in Huntington's disease iPSC-derived neural cells and rescue with glycolytic metabolites

by Kedaigle, Amanda J, Fraenkel, Ernest
Published 2020

Turning omics data into therapeutic insights

by Kedaigle, Amanda Joy, Fraenkel, Ernest
Published 2018

Integration of Proteomic, Transcriptional, and Interactome Data Reveals Hidden Signaling Components

by Huang, Shao-shan Carol, Fraenkel, Ernest
Published 2012

Swimming Upstream: Identifying Proteomic Signals that Drive Transcriptional Changes using the Interactome and Multiple "-Omics" Datasets

by Huang, Shao-shan Carol, Fraenkel, Ernest
Published 2014

Sequence analysis of chromatin immunoprecipitation data for factors

by MacIsaac, Kenzie Daniel, Fraenkel, Ernest
Published 2012

SAMNetWeb: identifying condition-specific networks linking signaling and transcription

by Oh, Coyin, Fraenkel, Ernest, Gosline, Sara Calafell
Published 2017

Shallow Sparsely-Connected Autoencoders for Gene Set Projection

by Gold, Maxwell P., Lenail, Alexander, Fraenkel, Ernest
Published 2020

WebMOTIFS: automated discovery, filtering and scoring of DNA sequence motifs using multiple programs and Bayesian approaches

by Romer, Katherine A., Kayombya, Guy-Richard, Fraenkel, Ernest
Published 2012

Unbiased, Genome-Wide In Vivo Mapping of Transcriptional Regulatory Elements Reveals Sex Differences in Chromatin Structure Associated with Sex-Specific Liver Gene Expression

by Ling, Guoyu, Sugathan, Aarathi, Mazor, Tali, Fraenkel, Ernest
Published 2010

Integrated network analyses for functional genomic studies in cancer

by Fraenkel, Ernest, Wilson, Jennifer Lynn, Hemann, Michael, Lauffenburger, Douglas A
Published 2014

SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets

by Spencer, Sarah J., Ursu, Oana, Fraenkel, Ernest, Gosline, Sara Jane Calafell
Published 2014

SteinerNet: a web server for integrating 'omic' data to discover hidden components of response pathways

by Tuncbag, Nurcan, McCallum, Scott, Huang, Shao-shan Carol, Fraenkel, Ernest
Published 2012

Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem

by Tuncbag, Nurcan, Braunstein, Alfredo, Pagnani, Andrea, Huang, Shao-Shan Carol, Chayes, Jennifer, Borgs, Christian, Zecchina, Riccardo, Fraenkel, Ernest, Tuncbag, Nurcan, Huang, Shao-Shan Carol, Fraenkel, Ernest
Published 2013

A Fast Prize-Collecting Steiner Forest Algorithm for Functional Analyses in Biological Networks

by Bertoni, Francesco, Kwee, Ivo, Montemanni, Roberto, Akhmedov, Murodzhon, Lenail, Alexander, Fraenkel, Ernest
Published 2018

Proteomics, Post-translational Modifications, and Integrative Analyses Reveal Molecular Heterogeneity within Medulloblastoma Subgroups

by Ehrenberger, Tobias, Gold, Maxwell P., LeNail, Alexander, Ramamoorthy, Divya, Fraenkel, Ernest
Published 2020

ResponseNet: revealing signaling and regulatory networks linking genetic transcriptomic screening data

by Lan, Alex, Smoly, Ilan Y., Rapaport, Guy, Lindquist, Susan, Fraenkel, Ernest, Yeger-Lotem, Esti
Published 2011

ResponseNet: revealing signaling and regulatory networks linking genetic and transcriptomic screening data

by Lan, Alex, Smoly, Ilan Y., Rapaport, Guy, Fraenkel, Ernest, Lindquist, Susan, Yeger-Lotem, Esti
Published 2012