Search Results - Altuna Akalin

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  1. 1

    Enhancing biomarker based oncology trial matching using large language models by Nour Alkhoury, Maqsood Shaik, Ricardo Wurmus, Altuna Akalin

    Published in npj Digital Medicine (2025-05-01)
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  2. 2

    scMaui: a widely applicable deep learning framework for single-cell multiomics integration in the presence of batch effects and missing data by Yunhee Jeong, Jonathan Ronen, Wolfgang Kopp, Pavlo Lutsik, Altuna Akalin

    Published in BMC Bioinformatics (2024-08-01)
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  3. 3

    Leveraging large language models for data analysis automation. by Jacqueline A Jansen, Artür Manukyan, Nour Al Khoury, Altuna Akalin

    Published in PLoS ONE (2025-01-01)
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  4. 4

    Evaluating large language model workflows in clinical decision support for triage and referral and diagnosis by Farieda Gaber, Maqsood Shaik, Fabio Allega, Agnes Julia Bilecz, Felix Busch, Kelsey Goon, Vedran Franke, Altuna Akalin

    Published in npj Digital Medicine (2025-05-01)
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  5. 5

    Pathogenic mutations of human phosphorylation sites affect protein–protein interactions by Trendelina Rrustemi, Katrina Meyer, Yvette Roske, Bora Uyar, Altuna Akalin, Koshi Imami, Yasushi Ishihama, Oliver Daumke, Matthias Selbach

    Published in Nature Communications (2024-04-01)
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  6. 6

    Flexynesis: A deep learning toolkit for bulk multi-omics data integration for precision oncology and beyond by Bora Uyar, Taras Savchyn, Amirhossein Naghsh Nilchi, Ahmet Sarigun, Ricardo Wurmus, Mohammed Maqsood Shaik, Björn Grüning, Vedran Franke, Altuna Akalin

    Published in Nature Communications (2025-09-01)
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  7. 7

    Dissecting the transcriptional regulatory properties of human chromosome 16 highly conserved non-coding regions. by José Luis Royo, Carmen Hidalgo, Yolanda Roncero, María Angeles Seda, Altuna Akalin, Boris Lenhard, Fernando Casares, José Luis Gómez-Skarmeta

    Published in PLoS ONE (2011-01-01)
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  8. 8

    The SPOC proteins DIDO3 and PHF3 co-regulate gene expression and neuronal differentiation by Johannes Benedum, Vedran Franke, Lisa-Marie Appel, Lena Walch, Melania Bruno, Rebecca Schneeweiss, Juliane Gruber, Helena Oberndorfer, Emma Frank, Xué Strobl, Anton Polyansky, Bojan Zagrovic, Altuna Akalin, Dea Slade

    Published in Nature Communications (2023-11-01)
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  9. 9

    Predicting lethal courses in critically ill COVID-19 patients using a machine learning model trained on patients with non-COVID-19 viral pneumonia by Gregor Lichtner, Felix Balzer, Stefan Haufe, Niklas Giesa, Fridtjof Schiefenhövel, Malte Schmieding, Carlo Jurth, Wolfgang Kopp, Altuna Akalin, Stefan J. Schaller, Steffen Weber-Carstens, Claudia Spies, Falk von Dincklage

    Published in Scientific Reports (2021-06-01)
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  10. 10

    RNA polymerase II primes Polycomb‐repressed developmental genes throughout terminal neuronal differentiation by Carmelo Ferrai, Elena Torlai Triglia, Jessica R Risner‐Janiczek, Tiago Rito, Owen JL Rackham, Inês de Santiago, Alexander Kukalev, Mario Nicodemi, Altuna Akalin, Meng Li, Mark A Ungless, Ana Pombo

    Published in Molecular Systems Biology (2017-10-01)
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  11. 11

    Publisher Correction: Herpesviruses mimic zygotic genome activation to promote viral replication by Eva Neugebauer, Stephanie Walter, Jiang Tan, Nir Drayman, Vedran Franke, Michiel van Gent, Sandra Pennisi, Pia Veratti, Karla S. Stein, Isabelle Welker, Savaş Tay, Georges M. G. M. Verjans, H. T. Marc Timmers, Altuna Akalin, Markus Landthaler, Armin Ensser, Emanuel Wyler, Florian Full

    Published in Nature Communications (2025-03-01)
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  12. 12

    Herpesviruses mimic zygotic genome activation to promote viral replication by Eva Neugebauer, Stephanie Walter, Jiang Tan, Nir Drayman, Vedran Franke, Michiel van Gent, Sandra Pennisi, Pia Veratti, Karla S. Stein, Isabelle Welker, Savaş Tay, Georges M. G. M. Verjans, H. T. Marc Timmers, Altuna Akalin, Markus Landthaler, Armin Ensser, Emanuel Wyler, Florian Full

    Published in Nature Communications (2025-01-01)
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  13. 13

    Complex Loci in human and mouse genomes. by Pär G Engström, Harukazu Suzuki, Noriko Ninomiya, Altuna Akalin, Luca Sessa, Giovanni Lavorgna, Alessandro Brozzi, Lucilla Luzi, Sin Lam Tan, Liang Yang, Galih Kunarso, Edwin Lian-Chong Ng, Serge Batalov, Claes Wahlestedt, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Christine Wells, Vladimir B Bajic, Valerio Orlando, James F Reid, Boris Lenhard, Leonard Lipovich

    Published in PLoS Genetics (2006-04-01)
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  14. 14

    Transcriptional reprogramming by mutated IRF4 in lymphoma by Nikolai Schleussner, Pierre Cauchy, Vedran Franke, Maciej Giefing, Oriol Fornes, Naveen Vankadari, Salam A. Assi, Mariantonia Costanza, Marc A. Weniger, Altuna Akalin, Ioannis Anagnostopoulos, Thomas Bukur, Marco G. Casarotto, Frederik Damm, Oliver Daumke, Benjamin Edginton-White, J. Christof M. Gebhardt, Michael Grau, Stephan Grunwald, Martin-Leo Hansmann, Sylvia Hartmann, Lionel Huber, Eva Kärgel, Simone Lusatis, Daniel Noerenberg, Nadine Obier, Ulrich Pannicke, Anja Fischer, Anja Reisser, Andreas Rosenwald, Klaus Schwarz, Srinivasan Sundararaj, Andre Weilemann, Wiebke Winkler, Wendan Xu, Georg Lenz, Klaus Rajewsky, Wyeth W. Wasserman, Peter N. Cockerill, Claus Scheidereit, Reiner Siebert, Ralf Küppers, Rudolf Grosschedl, Martin Janz, Constanze Bonifer, Stephan Mathas

    Published in Nature Communications (2023-11-01)
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  15. 15

    Cytosolic nucleic acid sensors and interferon beta-1 activation drive radiation-induced anti-tumour immune effects in human pancreatic cancer cells by Sylvia Kerschbaum-Gruber, Sylvia Kerschbaum-Gruber, Sylvia Kerschbaum-Gruber, Ava Kleinwächter, Ava Kleinwächter, Ava Kleinwächter, Ava Kleinwächter, Ava Kleinwächter, Katerina Popova, Katerina Popova, Katerina Popova, Alexandra Kneringer, Alexandra Kneringer, Alexandra Kneringer, Lisa-Marie Appel, Lisa-Marie Appel, Lisa-Marie Appel, Lisa-Marie Appel, Katharina Stasny, Anna Röhrer, Anna Röhrer, Anna Röhrer, Ana Beatriz Dias, Ana Beatriz Dias, Ana Beatriz Dias, Ana Beatriz Dias, Johannes Benedum, Johannes Benedum, Johannes Benedum, Johannes Benedum, Johannes Benedum, Lena Walch, Lena Walch, Andreas Postl, Andreas Postl, Andreas Postl, Sandra Barna, Sandra Barna, Sandra Barna, Bernhard Kratzer, Winfried F. Pickl, Winfried F. Pickl, Altuna Akalin, Filip Horvat, Filip Horvat, Vedran Franke, Joachim Widder, Joachim Widder, Dietmar Georg, Dietmar Georg, Dietmar Georg, Dea Slade, Dea Slade, Dea Slade, Dea Slade, Dea Slade

    Published in Frontiers in Immunology (2024-09-01)
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