Search Results - Anne E. Carpenter

Anne E. Carpenter

Self-portrait photograph Anne E. Carpenter is an American scientist in the field of image analysis for cell biology and artificial intelligence for drug discovery. She is the co-creator of CellProfiler, open-source software for high-throughput biological image analysis, and a co-inventor of the Cell Painting assay, a method for image-based profiling. She is an Institute Scientist and Senior Director of the Imaging Platform at the Broad Institute. Provided by Wikipedia
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  1. 1

    Bridging Domain and Data by Anne E. Carpenter

    Published in Patterns (2020-07-01)
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  2. 2

    CellProfiler™: free, versatile software for automated biological image analysis by Michael R. Lamprecht, David M. Sabatini, Anne E. Carpenter

    Published in BioTechniques (2007-01-01)
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  3. 3

    Predicting drug polypharmacology from cell morphology readouts using variational autoencoder latent space arithmetic. by Yuen Ler Chow, Shantanu Singh, Anne E Carpenter, Gregory P Way

    Published in PLoS Computational Biology (2022-02-01)
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  4. 4

    Capturing cell heterogeneity in representations of cell populations for image-based profiling using contrastive learning. by Robert van Dijk, John Arevalo, Mehrtash Babadi, Anne E Carpenter, Shantanu Singh

    Published in PLoS Computational Biology (2024-11-01)
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  5. 5

    Evaluating batch correction methods for image-based cell profiling by John Arevalo, Ellen Su, Jessica D. Ewald, Robert van Dijk, Anne E. Carpenter, Shantanu Singh

    Published in Nature Communications (2024-08-01)
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  6. 6

    Resolving cell state in iPSC-derived human neural samples with multiplexed fluorescence imaging by Martin L. Tomov, Alison O’Neil, Hamdah S. Abbasi, Beth A. Cimini, Anne E. Carpenter, Lee L. Rubin, Mark Bathe

    Published in Communications Biology (2021-06-01)
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  7. 7

    An intermittent live cell imaging screen for siRNA enhancers and suppressors of a kinesin-5 inhibitor. by Melody Tsui, Tiao Xie, James D Orth, Anne E Carpenter, Stewart Rudnicki, Suejong Kim, Caroline E Shamu, Timothy J Mitchison

    Published in PLoS ONE (2009-10-01)
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  8. 8

    Systematic morphological profiling of human gene and allele function via Cell Painting by Mohammad Hossein Rohban, Shantanu Singh, Xiaoyun Wu, Julia B Berthet, Mark-Anthony Bray, Yashaswi Shrestha, Xaralabos Varelas, Jesse S Boehm, Anne E Carpenter

    Published in eLife (2017-03-01)
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  9. 9

    Morphological Profiles of RNAi-Induced Gene Knockdown Are Highly Reproducible but Dominated by Seed Effects. by Shantanu Singh, Xiaoyun Wu, Vebjorn Ljosa, Mark-Anthony Bray, Federica Piccioni, David E Root, John G Doench, Jesse S Boehm, Anne E Carpenter

    Published in PLoS ONE (2015-01-01)
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  10. 10

    Predicting compound activity from phenotypic profiles and chemical structures by Nikita Moshkov, Tim Becker, Kevin Yang, Peter Horvath, Vlado Dancik, Bridget K. Wagner, Paul A. Clemons, Shantanu Singh, Anne E. Carpenter, Juan C. Caicedo

    Published in Nature Communications (2023-04-01)
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  11. 11

    High-content microscopy reveals a morphological signature of bortezomib resistance by Megan E Kelley, Adi Y Berman, David R Stirling, Beth A Cimini, Yu Han, Shantanu Singh, Anne E Carpenter, Tarun M Kapoor, Gregory P Way

    Published in eLife (2023-09-01)
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  12. 12

    A versatile information retrieval framework for evaluating profile strength and similarity by Alexandr A. Kalinin, John Arevalo, Erik Serrano, Loan Vulliard, Hillary Tsang, Michael Bornholdt, Alán F. Muñoz, Suganya Sivagurunathan, Bartek Rajwa, Anne E. Carpenter, Gregory P. Way, Shantanu Singh

    Published in Nature Communications (2025-06-01)
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  13. 13

    Identification of host-targeted small molecules that restrict intracellular Mycobacterium tuberculosis growth. by Sarah A Stanley, Amy K Barczak, Melanie R Silvis, Samantha S Luo, Kimberly Sogi, Martha Vokes, Mark-Anthony Bray, Anne E Carpenter, Christopher B Moore, Noman Siddiqi, Eric J Rubin, Deborah T Hung

    Published in PLoS Pathogens (2014-02-01)
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  14. 14

    Combining phenomics with transcriptomics reveals cell-type-specific morphological and molecular signatures of the 22q11.2 deletion by Matthew Tegtmeyer, Dhara Liyanage, Yu Han, Kathryn B. Hebert, Ruifan Pei, Gregory P. Way, Pearl V. Ryder, Derek Hawes, Callum Tromans-Coia, Beth A. Cimini, Anne E. Carpenter, Shantanu Singh, Ralda Nehme

    Published in Nature Communications (2025-07-01)
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  15. 15

    Learning representations for image-based profiling of perturbations by Nikita Moshkov, Michael Bornholdt, Santiago Benoit, Matthew Smith, Claire McQuin, Allen Goodman, Rebecca A. Senft, Yu Han, Mehrtash Babadi, Peter Horvath, Beth A. Cimini, Anne E. Carpenter, Shantanu Singh, Juan C. Caicedo

    Published in Nature Communications (2024-02-01)
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  16. 16

    CellProfiler 3.0: Next-generation image processing for biology. by Claire McQuin, Allen Goodman, Vasiliy Chernyshev, Lee Kamentsky, Beth A Cimini, Kyle W Karhohs, Minh Doan, Liya Ding, Susanne M Rafelski, Derek Thirstrup, Winfried Wiegraebe, Shantanu Singh, Tim Becker, Juan C Caicedo, Anne E Carpenter

    Published in PLoS Biology (2018-07-01)
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  17. 17

    High-content synaptic phenotyping in human cellular models reveals a role for BET proteins in synapse assembly by Martin H Berryer, Gizem Rizki, Anna Nathanson, Jenny A Klein, Darina Trendafilova, Sara G Susco, Daisy Lam, Angelica Messana, Kristina M Holton, Kyle W Karhohs, Beth A Cimini, Kathleen Pfaff, Anne E Carpenter, Lee L Rubin, Lindy E Barrett

    Published in eLife (2023-04-01)
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  18. 18

    A High-Content Screen Identifies TPP1 and Aurora B as Regulators of Axonal Mitochondrial Transport by Evgeny Shlevkov, Himanish Basu, Mark-Anthony Bray, Zheng Sun, Wei Wei, Kaan Apaydin, Kyle Karhohs, Pin-Fang Chen, Janell L.M. Smith, Ole Wiskow, Kasper Roet, Xuan Huang, Kevin Eggan, Anne E. Carpenter, Robin J. Kleiman, Thomas L. Schwarz

    Published in Cell Reports (2019-09-01)
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  19. 19

    Systematic, multiparametric analysis of Mycobacterium tuberculosis intracellular infection offers insight into coordinated virulence. by Amy K Barczak, Roi Avraham, Shantanu Singh, Samantha S Luo, Wei Ran Zhang, Mark-Anthony Bray, Amelia E Hinman, Matthew Thompson, Raymond M Nietupski, Aaron Golas, Paul Montgomery, Michael Fitzgerald, Roger S Smith, Dylan W White, Anna D Tischler, Anne E Carpenter, Deborah T Hung

    Published in PLoS Pathogens (2017-05-01)
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  20. 20

    High-dimensional phenotyping to define the genetic basis of cellular morphology by Matthew Tegtmeyer, Jatin Arora, Samira Asgari, Beth A. Cimini, Ajay Nadig, Emily Peirent, Dhara Liyanage, Gregory P. Way, Erin Weisbart, Aparna Nathan, Tiffany Amariuta, Kevin Eggan, Marzieh Haghighi, Steven A. McCarroll, Luke O’Connor, Anne E. Carpenter, Shantanu Singh, Ralda Nehme, Soumya Raychaudhuri

    Published in Nature Communications (2024-01-01)
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