Search Results - Athanasios Typas

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  1. 1

    2FAST2Q: a general-purpose sequence search and counting program for FASTQ files by Afonso M. Bravo, Athanasios Typas, Jan-Willem Veening

    Published in PeerJ (2022-10-01)
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  2. 2

    Towards a mechanistic understanding of reciprocal drug–microbiome interactions by Michael Zimmermann, Kiran Raosaheb Patil, Athanasios Typas, Lisa Maier

    Published in Molecular Systems Biology (2021-03-01)
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  3. 3

    Antibiotic-induced gut microbiome dysbiosis: risks and strategies for mitigation by Katharina Müller, Justine Gillard, Athanasios Typas, Michael Knopp, Camille V Goemans

    Published in The EMBO Journal (2026-05-01)
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  4. 4

    The impact of the genetic background on gene deletion phenotypes in Saccharomyces cerevisiae by Marco Galardini, Bede P Busby, Cristina Vieitez, Alistair S Dunham, Athanasios Typas, Pedro Beltrao

    Published in Molecular Systems Biology (2019-12-01)
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  5. 5

    A resource of variant effect predictions of single nucleotide variants in model organisms by Omar Wagih, Marco Galardini, Bede P Busby, Danish Memon, Athanasios Typas, Pedro Beltrao

    Published in Molecular Systems Biology (2018-12-01)
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  6. 6

    Transcriptional and Post-Transcriptional Polar Effects in Bacterial Gene Deletion Libraries by André Mateus, Malay Shah, Johannes Hevler, Nils Kurzawa, Jacob Bobonis, Athanasios Typas, Mikhail M. Savitski

    Published in mSystems (2021-10-01)
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  7. 7

    A Chemical-Genomic Screen of Neglected Antibiotics Reveals Illicit Transport of Kasugamycin and Blasticidin S. by Anthony L Shiver, Hendrik Osadnik, George Kritikos, Bo Li, Nevan Krogan, Athanasios Typas, Carol A Gross

    Published in PLoS Genetics (2016-06-01)
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  8. 8

    Bioactivity assessment of natural compounds using machine learning models trained on target similarity between drugs. by Vinita Periwal, Stefan Bassler, Sergej Andrejev, Natalia Gabrielli, Kaustubh Raosaheb Patil, Athanasios Typas, Kiran Raosaheb Patil

    Published in PLoS Computational Biology (2022-04-01)
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  9. 9

    Thermal proteome profiling in bacteria: probing protein state in vivo by André Mateus, Jacob Bobonis, Nils Kurzawa, Frank Stein, Dominic Helm, Johannes Hevler, Athanasios Typas, Mikhail M Savitski

    Published in Molecular Systems Biology (2018-07-01)
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  10. 10

    Thermal proteome profiling for interrogating protein interactions by André Mateus, Nils Kurzawa, Isabelle Becher, Sindhuja Sridharan, Dominic Helm, Frank Stein, Athanasios Typas, Mikhail M Savitski

    Published in Molecular Systems Biology (2020-03-01)
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  11. 11

    A pathogen-specific isotope tracing approach reveals metabolic activities and fluxes of intracellular Salmonella. by Karin Mitosch, Martin Beyß, Prasad Phapale, Bernhard Drotleff, Katharina Nöh, Theodore Alexandrov, Kiran R Patil, Athanasios Typas

    Published in PLoS Biology (2023-08-01)
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  12. 12

    Unravelling metabolic cross‐feeding in a yeast–bacteria community using 13C‐based proteomics by Natalia Gabrielli, Christoniki Maga‐Nteve, Eleni Kafkia, Mandy Rettel, Jakob Loeffler, Stephan Kamrad, Athanasios Typas, Kiran Raosaheb Patil

    Published in Molecular Systems Biology (2023-02-01)
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  13. 13

    An atlas of human kinase regulation by David Ochoa, Mindaugas Jonikas, Robert T Lawrence, Bachir El Debs, Joel Selkrig, Athanasios Typas, Judit Villén, Silvia DM Santos, Pedro Beltrao

    Published in Molecular Systems Biology (2016-12-01)
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  14. 14

    Bactericidal effect of tetracycline in E. coli strain ED1a may be associated with ribosome dysfunction by Iskander Khusainov, Natalie Romanov, Camille Goemans, Beata Turoňová, Christian E. Zimmerli, Sonja Welsch, Julian D. Langer, Athanasios Typas, Martin Beck

    Published in Nature Communications (2024-06-01)
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  15. 15

    Salmonella infection impacts host proteome thermal stability by Marlène S. Birk, Philipp Walch, Tarik Baykara, Stephanie Sefried, Jan Amelang, Elena Buerova, Ingrid Breuer, Jörg Vervoorts, Athanasios Typas, Mikhail M. Savitski, André Mateus, Joel Selkrig

    Published in European Journal of Cell Biology (2024-12-01)
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  16. 16

    Phenotype inference in an Escherichia coli strain panel by Marco Galardini, Alexandra Koumoutsi, Lucia Herrera-Dominguez, Juan Antonio Cordero Varela, Anja Telzerow, Omar Wagih, Morgane Wartel, Olivier Clermont, Erick Denamur, Athanasios Typas, Pedro Beltrao

    Published in eLife (2017-12-01)
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  17. 17

    AlphaDesign: a de novo protein design framework based on AlphaFold by Michael A Jendrusch, Alessio L J Yang, Elisabetta Cacace, Jacob Bobonis, Carlos G P Voogdt, Sarah Kaspar, Kristian Schweimer, Cecilia Perez-Borrajero, Karine Lapouge, Jacob Scheurich, Kim Remans, Janosch Hennig, Athanasios Typas, Jan O Korbel, S Kashif Sadiq

    Published in Molecular Systems Biology (2025-06-01)
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  18. 18

    Randomly barcoded transposon mutant libraries for gut commensals II: Applying libraries for functional genetics by Carlos Geert Pieter Voogdt, Surya Tripathi, Stefan Oliver Bassler, Saria A. McKeithen-Mead, Emma R. Guiberson, Alexandra Koumoutsi, Afonso Martins Bravo, Cullen Buie, Michael Zimmermann, Justin L. Sonnenburg, Athanasios Typas, Adam M. Deutschbauer, Anthony L. Shiver, Kerwyn Casey Huang

    Published in Cell Reports (2024-01-01)
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  19. 19

    Randomly barcoded transposon mutant libraries for gut commensals I: Strategies for efficient library construction by Surya Tripathi, Carlos Geert Pieter Voogdt, Stefan Oliver Bassler, Mary Anderson, Po-Hsun Huang, Nazgul Sakenova, Tümay Capraz, Sunit Jain, Alexandra Koumoutsi, Afonso Martins Bravo, Valentine Trotter, Michael Zimmerman, Justin L. Sonnenburg, Cullen Buie, Athanasios Typas, Adam M. Deutschbauer, Anthony L. Shiver, Kerwyn Casey Huang

    Published in Cell Reports (2024-01-01)
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  20. 20

    SARS‐CoV‐2 infection remodels the host protein thermal stability landscape by Joel Selkrig, Megan Stanifer, André Mateus, Karin Mitosch, Inigo Barrio‐Hernandez, Mandy Rettel, Heeyoung Kim, Carlos G P Voogdt, Philipp Walch, Carmon Kee, Nils Kurzawa, Frank Stein, Clément Potel, Anna Jarzab, Bernhard Kuster, Ralf Bartenschlager, Steeve Boulant, Pedro Beltrao, Athanasios Typas, Mikhail M Savitski

    Published in Molecular Systems Biology (2021-02-01)
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