Search Results - Benjamin P Berman

  • Showing 1 - 13 results of 13
Refine Results
  1. 1

    Understanding the complex chromatin dynamics in primary human neutrophils during PMA-induced NET formation by Brandi Atteberry, Benjamin P. Berman, Benjamin P. Berman, Theresa K. Kelly, Justin Cayford

    Published in Frontiers in Immunology (2024-10-01)
    Get full text
    Article


  2. 2

    Chromatin changes associated with neutrophil extracellular trap formation in whole blood reflect complex immune signaling by Justin Cayford, Brandi Atteberry, Akanksha Singh-Taylor, Andrew Retter, Andrew Retter, Andrew Retter, Benjamin P. Berman, Benjamin P. Berman, Theresa K. Kelly

    Published in Frontiers in Immunology (2025-03-01)
    Get full text
    Article


  3. 3

    CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes by Irene Unterman, Dana Avrahami, Efrat Katsman, Timothy J. Triche, Benjamin Glaser, Benjamin P. Berman

    Published in Genome Biology (2024-06-01)
    Get full text
    Article


  4. 4

    Author Correction: CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes by Irene Unterman, Dana Avrahami, Efrat Katsman, Timothy J. Triche, Benjamin Glaser, Benjamin P. Berman

    Published in Genome Biology (2024-07-01)
    Get full text
    Article


  5. 5

    Expanding the MECP2 network using comparative genomics reveals potential therapeutic targets for Rett syndrome by Irene Unterman, Idit Bloch, Simona Cazacu, Gila Kazimirsky, Bruria Ben-Zeev, Benjamin P Berman, Chaya Brodie, Yuval Tabach

    Published in eLife (2021-08-01)
    Get full text
    Article


  6. 6

    A pan-cancer analysis of CpG Island gene regulation reveals extensive plasticity within Polycomb target genes by Yueyuan Zheng, Guowei Huang, Tiago C. Silva, Qian Yang, Yan-Yi Jiang, H. Phillip Koeffler, De-Chen Lin, Benjamin P. Berman

    Published in Nature Communications (2021-04-01)
    Get full text
    Article


  7. 7

    Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity. by Li Jia, Benjamin P Berman, Unnati Jariwala, Xiting Yan, Jon P Cogan, Allison Walters, Ting Chen, Grant Buchanan, Baruch Frenkel, Gerhard A Coetzee

    Published in PLoS ONE (2008-01-01)
    Get full text
    Article


  8. 8

    Comprehensive analyses of partially methylated domains and differentially methylated regions in esophageal cancer reveal both cell-type- and cancer-specific epigenetic regulation by Yueyuan Zheng, Benjamin Ziman, Allen S. Ho, Uttam K. Sinha, Li-Yan Xu, En-Min Li, H Phillip Koeffler, Benjamin P. Berman, De-Chen Lin

    Published in Genome Biology (2023-08-01)
    Get full text
    Article


  9. 9

    Detecting cell-of-origin and cancer-specific methylation features of cell-free DNA from Nanopore sequencing by Efrat Katsman, Shari Orlanski, Filippo Martignano, Ilana Fox-Fisher, Ruth Shemer, Yuval Dor, Aviad Zick, Amir Eden, Iacopo Petrini, Silvestro G. Conticello, Benjamin P. Berman

    Published in Genome Biology (2022-07-01)
    Get full text
    Article


  10. 10

    GENAVi: a shiny web application for gene expression normalization, analysis and visualization by Alberto Luiz P. Reyes, Tiago C. Silva, Simon G. Coetzee, Jasmine T. Plummer, Brian D. Davis, Stephanie Chen, Dennis J. Hazelett, Kate Lawrenson, Benjamin P. Berman, Simon A. Gayther, Michelle R. Jones

    Published in BMC Genomics (2019-10-01)
    Get full text
    Article


  11. 11

    FOXC1 Activates Smoothened-Independent Hedgehog Signaling in Basal-like Breast Cancer by Bingchen Han, Ying Qu, Yanli Jin, Yi Yu, Nan Deng, Kolja Wawrowsky, Xiao Zhang, Na Li, Shikha Bose, Qiang Wang, Sugunadevi Sakkiah, Ravinder Abrol, Tor W. Jensen, Benjamin P. Berman, Hisashi Tanaka, Jeffrey Johnson, Bowen Gao, Jijun Hao, Zhenqiu Liu, Ralph Buttyan, Partha S. Ray, Mien-Chie Hung, Armando E. Giuliano, Xiaojiang Cui

    Published in Cell Reports (2015-11-01)
    Get full text
    Article


  12. 12

    DNA methylation and transcriptomic features are preserved throughout disease recurrence and chemoresistance in high grade serous ovarian cancers by Nicole Gull, Michelle R. Jones, Pei-Chen Peng, Simon G. Coetzee, Tiago C. Silva, Jasmine T. Plummer, Alberto Luiz P. Reyes, Brian D. Davis, Stephanie S. Chen, Kate Lawrenson, Jenny Lester, Christine Walsh, Bobbie J. Rimel, Andrew J. Li, Ilana Cass, Yonatan Berg, John-Paul B. Govindavari, Joanna K. L. Rutgers, Benjamin P. Berman, Beth Y. Karlan, Simon A. Gayther

    Get full text
    Article


  13. 13

    Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway by Jian Carrot-Zhang, Xiaotong Yao, Siddhartha Devarakonda, Aditya Deshpande, Jeffrey S. Damrauer, Tiago Chedraoui Silva, Christopher K. Wong, Hyo Young Choi, Ina Felau, A. Gordon Robertson, Mauro A.A. Castro, Lisui Bao, Esther Rheinbay, Eric Minwei Liu, Tuan Trieu, David Haan, Christina Yau, Toshinori Hinoue, Yuexin Liu, Ofer Shapira, Kiran Kumar, Karen L. Mungall, Hailei Zhang, Jake June-Koo Lee, Ashton Berger, Galen F. Gao, Binyamin Zhitomirsky, Wen-Wei Liang, Meng Zhou, Sitapriya Moorthi, Alice H. Berger, Eric A. Collisson, Michael C. Zody, Li Ding, Andrew D. Cherniack, Gad Getz, Olivier Elemento, Christopher C. Benz, Josh Stuart, J.C. Zenklusen, Rameen Beroukhim, Jason C. Chang, Joshua D. Campbell, D. Neil Hayes, Lixing Yang, Peter W. Laird, John N. Weinstein, David J. Kwiatkowski, Ming S. Tsao, William D. Travis, Ekta Khurana, Benjamin P. Berman, Katherine A. Hoadley, Nicolas Robine, Matthew Meyerson, Ramaswamy Govindan, Marcin Imielinski

    Published in Cell Reports (2021-02-01)
    Get full text
    Article


Search Tools: