Search Results - Daisuke Kihara

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  1. 1

    Editorial: Expert opinions in protein bioinformatics: 2022 by Daisuke Kihara

    Published in Frontiers in Bioinformatics (2024-01-01)
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  2. 2

    Advances in Structure Modeling Methods for Cryo-Electron Microscopy Maps by Eman Alnabati, Daisuke Kihara

    Published in Molecules (2019-12-01)
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  3. 3

    Quantitative comparison of protein-protein interaction interface using physicochemical feature-based descriptors of surface patches by Woong-Hee Shin, Woong-Hee Shin, Keiko Kumazawa, Kenichiro Imai, Takatsugu Hirokawa, Takatsugu Hirokawa, Daisuke Kihara, Daisuke Kihara, Daisuke Kihara

    Published in Frontiers in Molecular Biosciences (2023-02-01)
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  4. 4

    Domain-PFP allows protein function prediction using function-aware domain embedding representations by Nabil Ibtehaz, Yuki Kagaya, Daisuke Kihara

    Published in Communications Biology (2023-10-01)
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  5. 5

    When does structure modeling go wrong? A PDB-scale analysis of protein structure model validation using DAQ Score by Daisuke Kihara, Tsukasa Nakamura, Genki Terashi

    Published in Structural Dynamics (2025-10-01)
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  6. 6

    Computational prediction of disordered binding regions by Sushmita Basu, Daisuke Kihara, Lukasz Kurgan

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  7. 7

    GO2Sum: generating human-readable functional summary of proteins from GO terms by Swagarika Jaharlal Giri, Nabil Ibtehaz, Daisuke Kihara

    Published in npj Systems Biology and Applications (2024-03-01)
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  8. 8

    Bioinformatics Resources for Cancer Research with an Emphasis on Gene Function and Structure Prediction Tools by Daisuke Kihara, Yifeng David Yang, Troy Hawkins

    Published in Cancer Informatics (2006-01-01)
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  9. 9

    Learning with Privileged Knowledge Distillation for Improved Peptide–Protein Docking by Zicong Zhang, Jacob Verburgt, Yuki Kagaya, Charles Christoffer, Daisuke Kihara

    Published in ACS Omega (2025-06-01)
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  10. 10

    Three-Dimensional Compound Comparison Methods and Their Application in Drug Discovery by Woong-Hee Shin, Xiaolei Zhu, Mark Gregory Bures, Daisuke Kihara

    Published in Molecules (2015-07-01)
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  11. 11

    AI-based quality assessment methods for protein structure models from cryo-EM by Han Zhu, Genki Terashi, Farhanaz Farheen, Tsukasa Nakamura, Daisuke Kihara

    Published in Current Research in Structural Biology (2025-06-01)
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  12. 12

    Modeling disordered protein interactions from biophysical principles. by Lenna X Peterson, Amitava Roy, Charles Christoffer, Genki Terashi, Daisuke Kihara

    Published in PLoS Computational Biology (2017-04-01)
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  13. 13

    Distance-AF improves predicted protein structure models by AlphaFold2 with user-specified distance constraints by Yuanyuan Zhang, Zicong Zhang, Yuki Kagaya, Genki Terashi, Bowen Zhao, Yi Xiong, Daisuke Kihara

    Published in Communications Biology (2025-09-01)
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  14. 14

    NuFold: end-to-end approach for RNA tertiary structure prediction with flexible nucleobase center representation by Yuki Kagaya, Zicong Zhang, Nabil Ibtehaz, Xiao Wang, Tsukasa Nakamura, Pranav Deep Punuru, Daisuke Kihara

    Published in Nature Communications (2025-01-01)
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  15. 15

    Proteomic analysis of metabolic adaptation in a unicellular cyanobacterium during light-dark cycles and nitrogen fixation by Punyatoya Panda, Swagarika J. Giri, Venkatesh P. Thirumalaikumar, Louis A. Sherman, Daisuke Kihara, Uma K. Aryal

    Published in Scientific Reports (2025-10-01)
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  16. 16

    Error correction algorithms in non-null aspheric testing next generation sequencing data by Mourad Elloumi, Mostafa A. Ahmad, Ahmed H. Samak, Ali M. Al-Sharafi, Daisuke Kihara, Ahmed I. Taloba

    Published in Alexandria Engineering Journal (2022-12-01)
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  17. 17

    EMSuite Server: Advanced Tools for Cryo-EM Structure Modeling, Validation, and Refinement by Joon Hong Park, Javad Baghirov, Xiao Wang, Genki Terashi, Han Zhu, Yuki Kagaya, Pranav D Punuru, Shu Li, Devashish Prasad, Daisuke Kihara

    Published in Structural Dynamics (2025-10-01)
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  18. 18

    N-terminal Gly(224)-Gly(411) domain in Listeria adhesion protein interacts with host receptor Hsp60. by Balamurugan Jagadeesan, Amy E Fleishman Littlejohn, Mary Anne Roshni Amalaradjou, Atul K Singh, Krishna K Mishra, David La, Daisuke Kihara, Arun K Bhunia

    Published in PLoS ONE (2011-01-01)
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  19. 19

    Heterogeneity in Lowe Syndrome: Mutations Affecting the Phosphatase Domain of OCRL1 Differ in Impact on Enzymatic Activity and Severity of Cellular Phenotypes by Jennifer J. Lee, Swetha Ramadesikan, Adrianna F. Black, Charles Christoffer, Andres F. Pacheco Pacheco, Sneha Subramanian, Claudia B. Hanna, Gillian Barth, Cynthia V. Stauffacher, Daisuke Kihara, Ruben Claudio Aguilar

    Published in Biomolecules (2023-03-01)
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  20. 20

    A remarkable genetic shift in a transmitted/founder virus broadens antibody responses against HIV-1 by Swati Jain, Gherman Uritskiy, Marthandan Mahalingam, Himanshu Batra, Subhash Chand, Hung V Trinh, Charles Beck, Woong-Hee Shin, Wadad Alsalmi, Gustavo Kijak, Leigh A Eller, Jerome Kim, Daisuke Kihara, Sodsai Tovanabutra, Guido Ferrari, Merlin L Robb, Mangala Rao, Venigalla B Rao

    Published in eLife (2024-04-01)
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