Search Results - Efrem S. Lim

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  1. 1

    Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community by Efrem S. Lim, Cynthia Rodriguez, Lori R. Holtz

    Published in Microbiome (2018-05-01)
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  2. 2

    Reply Re: “Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community” by Efrem S. Lim, Cynthia Rodriguez, Lori R. Holtz

    Published in Microbiome (2019-02-01)
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  3. 3

    Longitudinal alterations in the urinary virome of kidney transplant recipients are influenced by BK viremia and patient sex by Rabia Maqsood, Lily I. Wu, Daniel C. Brennan, Efrem S. Lim

    Published in Microbiology Spectrum (2024-08-01)
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  4. 4

    Endogenization of a Prosimian Retrovirus during Lemur Evolution by Kathleen Apakupakul, Sharon L. Deem, Rabia Maqsood, Peeti Sithiyopasakul, David Wang, Efrem S. Lim

    Published in Viruses (2021-02-01)
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  5. 5

    Viral concentration method biases in the detection of viral profiles in wastewater by Naeema Cheshomi, Absar Alum, Matthew F. Smith, Efrem S. Lim, Otakuye Conroy-Ben, Morteza Abbaszadegan

    Published in Applied and Environmental Microbiology (2025-01-01)
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  6. 6

    Seasonality of respiratory, enteric, and urinary viruses revealed by wastewater genomic surveillance by Matthew F. Smith, Rabia Maqsood, Regan A. Sullins, Erin M. Driver, Rolf U. Halden, Efrem S. Lim

    Published in mSphere (2024-05-01)
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  7. 7

    Digital PCR Discriminates between SARS-CoV-2 Omicron Variants and Immune Escape Mutations by Steven C. Holland, LaRinda A. Holland, Matthew F. Smith, Mihyun B. Lee, James C. Hu, Efrem S. Lim

    Published in Microbiology Spectrum (2023-08-01)
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  8. 8

    Large-Scale Saliva-Based Clinical Surveillance Enables Real Time SARS-CoV-2 Outbreak Detection and Genomic Tracking (Arizona, 2020–2023) by Steven C. Holland, ABCTL Diagnostic Testing and Sequencing Teams, Ian Shoemaker, Theresa Rosov, Carolyn C. Compton, Joshua LaBaer, Efrem S. Lim, Vel Murugan

    Published in Diagnostics (2025-10-01)
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  9. 9

    Longitudinal cervicovaginal bacteriome and virome alterations associate with discordant shedding and ART duration in women living with HIV in Peru by Emily A. Kaelin, Caroline Mitchell, Jaime Soria, Alberto La Rosa, Eduardo Ticona, Robert W. Coombs, Lisa M. Frenkel, Marta E. Bull, Efrem S. Lim

    Published in Nature Communications (2025-08-01)
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  10. 10

    Genomic Sequencing Surveillance to Identify Respiratory Syncytial Virus Mutations, Arizona, USA by LaRinda A. Holland, Steven C. Holland, Matthew F. Smith, Victoria R. Leonard, Vel Murugan, Lora Nordstrom, Mary Mulrow, Raquel Salgado, Michael White, Efrem S. Lim

    Published in Emerging Infectious Diseases (2023-11-01)
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  11. 11

    The Linda Kizazi study: a comparison of morbidity and mortality from birth to 2 years between children who are HIV-unexposed and HIV-exposed, uninfected in the era of universal ant... by John Kinuthia, Dara A Lehman, Dalton Wamalwa, Brenda Wandika, Emily R Begnel, Ednah Ojee, Judy Adhiambo, Eliza Mabele, Vincent Ogweno, Efrem S Lim, Soren Gantt, Jennifer Slyker

    Published in BMJ Global Health (2025-01-01)
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  12. 12

    SARS-CoV-2 Delta Variant N Gene Mutations Reduce Sensitivity to the TaqPath COVID-19 Multiplex Molecular Diagnostic Assay by Steven C. Holland, Ajeet Bains, LaRinda A. Holland, Matthew F. Smith, Regan A. Sullins, Nicholas J. Mellor, Alexis W. Thomas, Nathaniel Johnson, Vel Murugan, Efrem S. Lim

    Published in Viruses (2022-06-01)
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  13. 13

    Andrographolide Attenuates Gut-Brain-Axis Associated Pathology in Gulf War Illness by Modulating Bacteriome-Virome Associated Inflammation and Microglia-Neuron Proinflammatory Cros... by Punnag Saha, Peter T. Skidmore, LaRinda A. Holland, Ayan Mondal, Dipro Bose, Ratanesh K. Seth, Kimberly Sullivan, Patricia A. Janulewicz, Ronnie Horner, Nancy Klimas, Mitzi Nagarkatti, Prakash Nagarkatti, Efrem S. Lim, Saurabh Chatterjee

    Published in Brain Sciences (2021-07-01)
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  14. 14

    Gut virome and microbiome dynamics before and after SARS-CoV-2 infection in women living with HIV and their infants by Rabia Maqsood, LaRinda A. Holland, Lily I. Wu, Emily R. Begnel, Judith Adhiambo, Prestone Owiti, Bhavna H. Chohan, Soren Gantt, John Kinuthia, Dalton Wamalwa, Ednah Ojee, Barbra A. Richardson, Jennifer Slyker, Dara A. Lehman, Efrem S. Lim

    Published in Gut Microbes (2024-12-01)
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  15. 15

    One health genomic surveillance and response to a university-based outbreak of the SARS-CoV-2 Delta AY.25 lineage, Arizona, 2021 by Hayley D. Yaglom, Matthew Maurer, Brooke Collins, Jacob Hojnacki, Juan Monroy-Nieto, Jolene R. Bowers, Samuel Packard, Daryn E. Erickson, Zachary A. Barrand, Kyle M. Simmons, Breezy N. Brock, Efrem S. Lim, Sandra Smith, Crystal M. Hepp, David M. Engelthaler

    Published in PLoS ONE (2022-01-01)
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  16. 16

    Influenza Virus Genomic Surveillance, Arizona, USA, 2023–2024 by Rabia Maqsood, Matthew F. Smith, LaRinda A. Holland, Regan A. Sullins, Steven C. Holland, Michelle Tan, Gabrielle M. Hernandez Barrera, Alexis W. Thomas, Mario Islas, Joanna L. Kramer, Lora Nordstrom, Mary Mulrow, Michael White, Vel Murugan, Efrem S. Lim

    Published in Viruses (2024-04-01)
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  17. 17

    Breast Milk Virome and Bacterial Microbiome Resilience in Kenyan Women Living with HIV by Rabia Maqsood, Joshua B. Reus, Lily I. Wu, LaRinda A. Holland, Ruth Nduati, Dorothy Mbori-Ngacha, Elizabeth Maleche-Obimbo, Emily R. Begnel, Soren Gantt, Ednah Ojee, Dalton Wamalwa, Grace John-Stewart, Jennifer Slyker, Dara A. Lehman, Efrem S. Lim

    Published in mSystems (2021-04-01)
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  18. 18

    HIV and SARS-CoV-2 infection in postpartum Kenyan women and their infants. by Emily R Begnel, Bhavna H Chohan, Ednah Ojee, Judith Adhiambo, Prestone Owiti, Vincent Ogweno, LaRinda A Holland, Carolyn S Fish, Barbra A Richardson, Adam K Khan, Rabia Maqsood, Efrem S Lim, Manish Sadarangani, Dara A Lehman, Jennifer Slyker, John Kinuthia, Dalton Wamalwa, Soren Gantt

    Published in PLoS ONE (2023-01-01)
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  19. 19

    Longitudinal dynamics of the nasopharyngeal microbiome in response to SARS-CoV-2 Omicron variant and HIV infection in Kenyan women and their children by Ayla Žuštra, Victoria R. Leonard, LaRinda A. Holland, James C. Hu, Tianchen Mu, Steven C. Holland, Lily I. Wu, Emily R. Begnel, Ednah Ojee, Bhavna H. Chohan, Barbra A. Richardson, John Kinuthia, Dalton Wamalwa, Jennifer Slyker, Dara A. Lehman, Soren Gantt, Efrem S. Lim

    Published in mSystems (2025-05-01)
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  20. 20

    Baseline Sequencing Surveillance of Public Clinical Testing, Hospitals, and Community Wastewater Reveals Rapid Emergence of SARS-CoV-2 Omicron Variant of Concern in Arizona, USA by Matthew F. Smith, Steven C. Holland, Mihyun B. Lee, James C. Hu, Nghia C. Pham, Regan A. Sullins, LaRinda A. Holland, Tianchen Mu, Alexis W. Thomas, Remington Fitch, Erin M. Driver, Rolf U. Halden, Michelle Villegas-Gold, Sheri Sanders, Jennifer L. Krauss, Lora Nordstrom, Mary Mulrow, Michael White, Vel Murugan, Efrem S. Lim

    Published in mBio (2023-02-01)
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