Search Results - Gary D. Bader

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  1. 1

    Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers by Jüri Reimand, Gary D Bader

    Published in Molecular Systems Biology (2013-01-01)
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  2. 2

    Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers by Jüri Reimand, Gary D Bader

    Published in Molecular Systems Biology (2014-08-01)
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  3. 3

    RETINA: Reconstruction-based pre-trained enhanced TransUNet for electron microscopy segmentation on the CEM500K dataset. by Cheng Xing, Ronald Xie, Gary D Bader

    Published in PLoS Computational Biology (2025-05-01)
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  4. 4

    Interpretable single-cell factor decomposition using sciRED by Delaram Pouyabahar, Tallulah Andrews, Gary D. Bader

    Published in Nature Communications (2025-02-01)
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  5. 5

    Fatecode enables cell fate regulator prediction using classification-supervised autoencoder perturbation by Mehrshad Sadria, Anita Layton, Sidhartha Goyal, Gary D. Bader

    Published in Cell Reports: Methods (2024-07-01)
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  6. 6

    Control of tissue development and cell diversity by cell cycle-dependent transcriptional filtering by Maria Abou Chakra, Ruth Isserlin, Thinh N Tran, Gary D Bader

    Published in eLife (2021-07-01)
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  7. 7

    Mapping the Hsp90 genetic interaction network in Candida albicans reveals environmental contingency and rewired circuitry. by Stephanie Diezmann, Magali Michaut, Rebecca S Shapiro, Gary D Bader, Leah E Cowen

    Published in PLoS Genetics (2012-01-01)
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  8. 8

    netDx: interpretable patient classification using integrated patient similarity networks by Shraddha Pai, Shirley Hui, Ruth Isserlin, Muhammad A Shah, Hussam Kaka, Gary D Bader

    Published in Molecular Systems Biology (2019-03-01)
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  9. 9

    Chromatin is an ancient innovation conserved between Archaea and Eukarya by Ron Ammar, Dax Torti, Kyle Tsui, Marinella Gebbia, Tanja Durbic, Gary D Bader, Guri Giaever, Corey Nislow

    Published in eLife (2012-12-01)
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  10. 10

    Exploring targets of TET2-mediated methylation reprogramming as potential discriminators of prostate cancer progression by Shivani Kamdar, Ruth Isserlin, Theodorus Van der Kwast, Alexandre R. Zlotta, Gary D. Bader, Neil E. Fleshner, Bharati Bapat

    Published in Clinical Epigenetics (2019-03-01)
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  11. 11

    Dynamic interaction networks in a hierarchically organized tissue by Daniel C Kirouac, Caryn Ito, Elizabeth Csaszar, Aline Roch, Mei Yu, Edward A Sykes, Gary D Bader, Peter W Zandstra

    Published in Molecular Systems Biology (2010-10-01)
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  12. 12

    Intercellular network structure and regulatory motifs in the human hematopoietic system by Wenlian Qiao, Weijia Wang, Elisa Laurenti, Andrei L Turinsky, Shoshana J Wodak, Gary D Bader, John E Dick, Peter W Zandstra

    Published in Molecular Systems Biology (2014-07-01)
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  13. 13

    From bytes to bedside: data integration and computational biology for translational cancer research. by Jomol P Mathew, Barry S Taylor, Gary D Bader, Saiju Pyarajan, Marco Antoniotti, Arul M Chinnaiyan, Chris Sander, Steven J Burakoff, Bud Mishra

    Published in PLoS Computational Biology (2007-02-01)
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  14. 14

    The multiple‐specificity landscape of modular peptide recognition domains by David Gfeller, Frank Butty, Marta Wierzbicka, Erik Verschueren, Peter Vanhee, Haiming Huang, Andreas Ernst, Nisa Dar, Igor Stagljar, Luis Serrano, Sachdev S Sidhu, Gary D Bader, Philip M Kim

    Published in Molecular Systems Biology (2011-04-01)
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  15. 15

    Approaches to identify scenarios for data science implementations within healthcare settings: recommendations based on experiences at multiple academic institutions by Lillian Sung, Michael Brudno, Michael C. W. Caesar, Amol A. Verma, Brad Buchsbaum, Ravi Retnakaran, Vasily Giannakeas, Azadeh Kushki, Gary D. Bader, Helen Lasthiotakis, Muhammad Mamdani, Lisa Strug

    Published in Frontiers in Digital Health (2025-03-01)
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  16. 16

    Metabolic adaptation to chronic inhibition of mitochondrial protein synthesis in acute myeloid leukemia cells. by Bozhena Jhas, Shrivani Sriskanthadevan, Marko Skrtic, Mahadeo A Sukhai, Veronique Voisin, Yulia Jitkova, Marcela Gronda, Rose Hurren, Rob C Laister, Gary D Bader, Mark D Minden, Aaron D Schimmer

    Published in PLoS ONE (2013-01-01)
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  17. 17

    Combined deletion of Pten and p53 in mammary epithelium accelerates triple‐negative breast cancer with dependency on eEF2K by Jeff C Liu, Veronique Voisin, Sharon Wang, Dong‐Yu Wang, Robert A Jones, Alessandro Datti, David Uehling, Rima Al‐awar, Sean E Egan, Gary D Bader, Ming Tsao, Tak W Mak, Eldad Zacksenhaus

    Published in EMBO Molecular Medicine (2014-10-01)
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  18. 18

    Large‐scale survey and database of high affinity ligands for peptide recognition modules by Joan Teyra, Abdellali Kelil, Shobhit Jain, Mohamed Helmy, Raghav Jajodia, Yogesh Hooda, Jun Gu, Akshay A D’Cruz, Sandra E Nicholson, Jinrong Min, Marius Sudol, Philip M Kim, Gary D Bader, Sachdev S Sidhu

    Published in Molecular Systems Biology (2020-12-01)
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  19. 19

    Correction: Analysis of an engineered organoid model of pancreatic cancer identifies hypoxia as a contributing factor in determining transcriptional subtypes by Natalie Landon-Brace, Simon Latour, Brendan T. Innes, Michelle Nurse, Jose L. Cadavid, Ileana L. Co, Cassidy M. Tan, Ferris Nowlan, Sibyl Drissler, Faiyaz Notta, Hartland Warren Jackson, Gary D. Bader, Alison P. McGuigan

    Published in Scientific Reports (2025-09-01)
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  20. 20

    Analysis of an engineered organoid model of pancreatic cancer identifies hypoxia as a contributing factor in determining transcriptional subtypes by Natalie Landon-Brace, Simon Latour, Brendan T. Innes, Michelle Nurse, Jose L. Cadavid, Ileana L. Co, Cassidy M. Tan, Ferris Nowlan, Sibyl Drissler, Faiyaz Notta, Hartland Warren Jackson, Gary D. Bader, Alison P. McGuigan

    Published in Scientific Reports (2025-07-01)
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