Search Results - Matthew Stephens

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  1. 1

    Correction: A Unified Framework for Association Analysis with Multiple Related Phenotypes. by Matthew Stephens

    Published in PLoS ONE (2019-01-01)
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  2. 2

    Linkage disequilibrium-based quality control for large-scale genetic studies. by Paul Scheet, Matthew Stephens

    Published in PLoS Genetics (2008-08-01)
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  3. 3

    Polygenic modeling with bayesian sparse linear mixed models. by Xiang Zhou, Peter Carbonetto, Matthew Stephens

    Published in PLoS Genetics (2013-01-01)
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  4. 4

    Visualizing the structure of RNA-seq expression data using grade of membership models. by Kushal K Dey, Chiaowen Joyce Hsiao, Matthew Stephens

    Published in PLoS Genetics (2017-03-01)
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  5. 5

    Fine-mapping from summary data with the "Sum of Single Effects" model. by Yuxin Zou, Peter Carbonetto, Gao Wang, Matthew Stephens

    Published in PLoS Genetics (2022-07-01)
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  6. 6

    A statistical framework for joint eQTL analysis in multiple tissues. by Timothée Flutre, Xiaoquan Wen, Jonathan Pritchard, Matthew Stephens

    Published in PLoS Genetics (2013-05-01)
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  7. 7

    A Simple Model-Based Approach to Inferring and Visualizing Cancer Mutation Signatures. by Yuichi Shiraishi, Georg Tremmel, Satoru Miyano, Matthew Stephens

    Published in PLoS Genetics (2015-12-01)
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  8. 8

    Mesenteric Lymphatic Alterations Observed During DSS Induced Intestinal Inflammation Are Driven in a TLR4-PAMP/DAMP Discriminative Manner by Matthew Stephens, Shan Liao, Pierre-Yves von der Weid

    Published in Frontiers in Immunology (2019-03-01)
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  9. 9

    The genetic architecture of gene expression levels in wild baboons by Jenny Tung, Xiang Zhou, Susan C Alberts, Matthew Stephens, Yoav Gilad

    Published in eLife (2015-02-01)
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  10. 10

    Dynamic effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes by Michelle C Ward, Nicholas E Banovich, Abhishek Sarkar, Matthew Stephens, Yoav Gilad

    Published in eLife (2021-02-01)
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  11. 11

    Regional influences on community structure across the tropical-temperate divide by Alexander E. White, Kushal K. Dey, Dhananjai Mohan, Matthew Stephens, Trevor D. Price

    Published in Nature Communications (2019-06-01)
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  12. 12

    GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership by Peter Carbonetto, Kaixuan Luo, Abhishek Sarkar, Anthony Hung, Karl Tayeb, Sebastian Pott, Matthew Stephens

    Published in Genome Biology (2023-10-01)
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  13. 13

    Variation in human recombination rates and its genetic determinants. by Adi Fledel-Alon, Ellen Miranda Leffler, Yongtao Guan, Matthew Stephens, Graham Coop, Molly Przeworski

    Published in PLoS ONE (2011-01-01)
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  14. 14

    Genetic, functional and molecular features of glucocorticoid receptor binding. by Francesca Luca, Joseph C Maranville, Allison L Richards, David B Witonsky, Matthew Stephens, Anna Di Rienzo

    Published in PLoS ONE (2013-01-01)
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  15. 15

    High-resolution mapping of expression-QTLs yields insight into human gene regulation. by Jean-Baptiste Veyrieras, Sridhar Kudaravalli, Su Yeon Kim, Emmanouil T Dermitzakis, Yoav Gilad, Matthew Stephens, Jonathan K Pritchard

    Published in PLoS Genetics (2008-10-01)
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  16. 16

    Discovery and characterization of variance QTLs in human induced pluripotent stem cells. by Abhishek K Sarkar, Po-Yuan Tung, John D Blischak, Jonathan E Burnett, Yang I Li, Matthew Stephens, Yoav Gilad

    Published in PLoS Genetics (2019-04-01)
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  17. 17

    Genome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13). by Amy B Hart, Barbara E Engelhardt, Margaret C Wardle, Greta Sokoloff, Matthew Stephens, Harriet de Wit, Abraham A Palmer

    Published in PLoS ONE (2012-01-01)
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  18. 18

    Interactions between glucocorticoid treatment and cis-regulatory polymorphisms contribute to cellular response phenotypes. by Joseph C Maranville, Francesca Luca, Allison L Richards, Xiaoquan Wen, David B Witonsky, Shaneen Baxter, Matthew Stephens, Anna Di Rienzo

    Published in PLoS Genetics (2011-07-01)
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  19. 19

    A multivariate genome-wide association analysis of 10 LDL subfractions, and their response to statin treatment, in 1868 Caucasians. by Heejung Shim, Daniel I Chasman, Joshua D Smith, Samia Mora, Paul M Ridker, Deborah A Nickerson, Ronald M Krauss, Matthew Stephens

    Published in PLoS ONE (2015-01-01)
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  20. 20

    Thousands of novel translated open reading frames in humans inferred by ribosome footprint profiling by Anil Raj, Sidney H Wang, Heejung Shim, Arbel Harpak, Yang I Li, Brett Engelmann, Matthew Stephens, Yoav Gilad, Jonathan K Pritchard

    Published in eLife (2016-05-01)
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