Search Results - Obi L. Griffith

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  1. 1

    Clinical implications of neoepitope landscapes for adult and pediatric cancers by Yang-Yang Feng, Obi L. Griffith, Malachi Griffith

    Published in Genome Medicine (2017-08-01)
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  2. 2

    Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud. by Malachi Griffith, Jason R Walker, Nicholas C Spies, Benjamin J Ainscough, Obi L Griffith

    Published in PLoS Computational Biology (2015-08-01)
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  3. 3

    Best practices for bioinformatic characterization of neoantigens for clinical utility by Megan M. Richters, Huiming Xia, Katie M. Campbell, William E. Gillanders, Obi L. Griffith, Malachi Griffith

    Published in Genome Medicine (2019-08-01)
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  4. 4

    Text-mining clinically relevant cancer biomarkers for curation into the CIViC database by Jake Lever, Martin R. Jones, Arpad M. Danos, Kilannin Krysiak, Melika Bonakdar, Jasleen K. Grewal, Luka Culibrk, Obi L. Griffith, Malachi Griffith, Steven J. M. Jones

    Published in Genome Medicine (2019-12-01)
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  5. 5

    Metagenomic Analysis of DNA Viruses with Targeted Sequence Capture of Canine Lobular Orbital Adenomas and Normal Conjunctiva by Elizabeth A. F. Schaefer, Shirley Chu, Kristine M. Wylie, Todd N. Wylie, Obi L. Griffith, Jacqueline W. Pearce, Gayle C. Johnson, Jeffrey N. Bryan, Brian K. Flesner

    Published in Microorganisms (2023-04-01)
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  6. 6

    Genomic landscape and gene expression profiles of feline oral squamous cell carcinoma by Alana R. Rodney, Zachary L. Skidmore, Jennifer K. Grenier, Obi L. Griffith, Andrew D. Miller, Shirley Chu, Faraz Ahmed, Jeffrey N. Bryan, Santiago Peralta, Wesley C. Warren

    Published in Frontiers in Veterinary Science (2023-05-01)
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  7. 7

    Endothelial cells are a key target of IFN-g during response to combined PD-1/CTLA-4 ICB treatment in a mouse model of bladder cancer by Sharon L. Freshour, Timothy H.-P. Chen, Bryan Fisk, Haolin Shen, Matthew Mosior, Zachary L. Skidmore, Catrina Fronick, Jennifer K. Bolzenius, Obi L. Griffith, Vivek K. Arora, Malachi Griffith

    Published in iScience (2023-10-01)
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  8. 8

    Integrative genomic analysis reveals low T-cell infiltration as the primary feature of tobacco use in HPV-positive oropharyngeal cancer by Benjamin M. Wahle, Paul Zolkind, Ricardo J. Ramirez, Zachary L. Skidmore, Sydney R. Anderson, Angela Mazul, D. Neil Hayes, Vlad C. Sandulache, Wade L. Thorstad, Douglas Adkins, Obi L. Griffith, Malachi Griffith, Jose P. Zevallos

    Published in iScience (2022-05-01)
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  9. 9

    Personalized ctDNA micro-panels can monitor and predict clinical outcomes for patients with triple-negative breast cancer by Erica K. Barnell, Bryan Fisk, Zachary L. Skidmore, Kelsy C. Cotto, Anamika Basu, Aparna Anand, Megan M. Richters, Jingqin Luo, Catrina Fronick, Meenakshi Anurag, Robert Fulton, Matthew J. Ellis, Obi L. Griffith, Malachi Griffith, Foluso O. Ademuyiwa

    Published in Scientific Reports (2022-10-01)
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  10. 10

    A case of acute myeloid leukemia with promyelocytic features characterized by expression of a novel RARG-CPSF6 fusion by Christopher A. Miller, Christopher Tricarico, Zachary L. Skidmore, Geoffrey L. Uy, Yi-Shan Lee, Anjum Hassan, Michelle D. O'Laughlin, Heather Schmidt, Ling Tian, Eric J. Duncavage, Malachi Griffith, Obi L. Griffith, John S. Welch, Lukas D. Wartman

    Published in Blood Advances (2018-06-01)
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  11. 11

    Single-cell T-cell receptor repertoire profiling in dogs by My H. Hoang, Zachary L. Skidmore, Hans Rindt, Shirley Chu, Bryan Fisk, Jennifer A. Foltz, Catrina Fronick, Robert Fulton, Mingyi Zhou, Nathan J. Bivens, Carol N. Reinero, Todd A. Fehniger, Malachi Griffith, Jeffrey N. Bryan, Obi L. Griffith

    Published in Communications Biology (2024-04-01)
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  12. 12

    pVACview: an interactive visualization tool for efficient neoantigen prioritization and selection by Huiming Xia, My H. Hoang, Evelyn Schmidt, Susanna Kiwala, Joshua McMichael, Zachary L. Skidmore, Bryan Fisk, Jonathan J. Song, Jasreet Hundal, Thomas Mooney, Jason R. Walker, S. Peter Goedegebuure, Christopher A. Miller, William E. Gillanders, Obi L. Griffith, Malachi Griffith

    Published in Genome Medicine (2024-11-01)
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  13. 13

    Whole-genome sequences reveal zygotic composition in chimeric twins by Christopher J. Yoon, Chang Hyun Nam, Taewoo Kim, Jeong Seok Lee, Ryul Kim, Kijong Yi, June-Young Koh, Jiye Kim, Hyein Won, Ji Won Oh, Obi L. Griffith, Malachi Griffith, Joohon Sung, Tae Yeul Kim, Duck Cho, Ji Seon Choi, Young Seok Ju

    Published in HGG Advances (2024-07-01)
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  14. 14

    F11R is a novel monocyte prognostic biomarker for malignant glioma. by Winnie W Pong, Jason Walker, Todd Wylie, Vincent Magrini, Jingqin Luo, Ryan J Emnett, Jaebok Choi, Matthew L Cooper, Malachi Griffith, Obi L Griffith, Joshua B Rubin, Gregory N Fuller, David Piwnica-Worms, Xi Feng, Dolores Hambardzumyan, John F DiPersio, Elaine R Mardis, David H Gutmann

    Published in PLoS ONE (2013-01-01)
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  15. 15

    SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution. by Christopher A Miller, Brian S White, Nathan D Dees, Malachi Griffith, John S Welch, Obi L Griffith, Ravi Vij, Michael H Tomasson, Timothy A Graubert, Matthew J Walter, Matthew J Ellis, William Schierding, John F DiPersio, Timothy J Ley, Elaine R Mardis, Richard K Wilson, Li Ding

    Published in PLoS Computational Biology (2014-08-01)
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  16. 16

    Aromatase inhibition remodels the clonal architecture of estrogen-receptor-positive breast cancers by Christopher A. Miller, Yevgeniy Gindin, Charles Lu, Obi L Griffith, Malachi Griffith, Dong Shen, Jeremy Hoog, Tiandao Li, David E. Larson, Mark Watson, Sherri R Davies, Kelly Hunt, Vera J. Suman, Jacqueline Snider, Thomas Walsh, Graham A. Colditz, Katherine DeSchryver, Richard K. Wilson, Elaine R. Mardis, Matthew J. Ellis

    Published in Nature Communications (2016-08-01)
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  17. 17

    Decoupling of the PI3K Pathway via Mutation Necessitates Combinatorial Treatment in HER2+ Breast Cancer. by James E Korkola, Eric A Collisson, Laura Heiser, Chris Oates, Nora Bayani, Sleiman Itani, Amanda Esch, Wallace Thompson, Obi L Griffith, Nicholas J Wang, Wen-Lin Kuo, Brian Cooper, Jessica Billig, Safiyyah Ziyad, Jenny L Hung, Lakshmi Jakkula, Heidi Feiler, Yiling Lu, Gordon B Mills, Paul T Spellman, Claire Tomlin, Sach Mukherjee, Joe W Gray

    Published in PLoS ONE (2015-01-01)
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  18. 18

    Truncating Prolactin Receptor Mutations Promote Tumor Growth in Murine Estrogen Receptor-Alpha Mammary Carcinomas by Obi L. Griffith, Szeman Ruby Chan, Malachi Griffith, Kilannin Krysiak, Zachary L. Skidmore, Jasreet Hundal, Julie A. Allen, Cora D. Arthur, Daniele Runci, Mattia Bugatti, Alexander P. Miceli, Heather Schmidt, Lee Trani, Krishna-Latha Kanchi, Christopher A. Miller, David E. Larson, Robert S. Fulton, William Vermi, Richard K. Wilson, Robert D. Schreiber, Elaine R. Mardis

    Published in Cell Reports (2016-09-01)
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  19. 19

    Standard operating procedure for curation and clinical interpretation of variants in cancer by Arpad M. Danos, Kilannin Krysiak, Erica K. Barnell, Adam C. Coffman, Joshua F. McMichael, Susanna Kiwala, Nicholas C. Spies, Lana M. Sheta, Shahil P. Pema, Lynzey Kujan, Kaitlin A. Clark, Amber Z. Wollam, Shruti Rao, Deborah I. Ritter, Dmitriy Sonkin, Gordana Raca, Wan-Hsin Lin, Cameron J. Grisdale, Raymond H. Kim, Alex H. Wagner, Subha Madhavan, Malachi Griffith, Obi L. Griffith

    Published in Genome Medicine (2019-11-01)
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  20. 20

    Integrated analysis of genomic and transcriptomic data for the discovery of splice-associated variants in cancer by Kelsy C. Cotto, Yang-Yang Feng, Avinash Ramu, Megan Richters, Sharon L. Freshour, Zachary L. Skidmore, Huiming Xia, Joshua F. McMichael, Jason Kunisaki, Katie M. Campbell, Timothy Hung-Po Chen, Emily B. Rozycki, Douglas Adkins, Siddhartha Devarakonda, Sumithra Sankararaman, Yiing Lin, William C. Chapman, Christopher A. Maher, Vivek Arora, Gavin P. Dunn, Ravindra Uppaluri, Ramaswamy Govindan, Obi L. Griffith, Malachi Griffith

    Published in Nature Communications (2023-03-01)
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