検索結果 - Simon Roux

MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes 著者: Clément Coclet, Antonio Pedro Camargo, Simon Roux

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Coming-of-Age Characterization of Soil Viruses: A User’s Guide to Virus Isolation, Detection within Metagenomes, and Viromics 著者: Gareth Trubl, Paul Hyman, Simon Roux, Stephen T. Abedon

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Solvent-Producing Clostridia Revisited 著者: David T. Jones, Frederik Schulz, Simon Roux, Steven D. Brown

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Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences 著者: Simon Roux, Mart Krupovic, Didier Debroas, Patrick Forterre, François Enault

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VirSorter: mining viral signal from microbial genomic data 著者: Simon Roux, Francois Enault, Bonnie L. Hurwitz, Matthew B. Sullivan

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Evolution and diversity of the Microviridae viral family through a collection of 81 new complete genomes assembled from virome reads. 著者: Simon Roux, Mart Krupovic, Axel Poulet, Didier Debroas, François Enault

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Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamics 著者: Hoon Je Seong, Simon Roux, Chung Yeon Hwang, Woo Jun Sul

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Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity 著者: Simon Roux, Joanne B. Emerson, Emiley A. Eloe-Fadrosh, Matthew B. Sullivan

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Updated Virophage Taxonomy and Distinction from Polinton-like Viruses 著者: Simon Roux, Matthias G. Fischer, Thomas Hackl, Laura A. Katz, Frederik Schulz, Natalya Yutin

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vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria 著者: Benjamin Bolduc, Ho Bin Jang, Guilhem Doulcier, Zhi-Qiang You, Simon Roux, Matthew B. Sullivan

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Tunturi virus isolates and metagenome-assembled viral genomes provide insights into the virome of Acidobacteriota in Arctic tundra soils 著者: Tatiana Demina, Heli Marttila, Igor S. Pessi, Minna K. Männistö, Bas E. Dutilh, Simon Roux, Jenni Hultman

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Comparative Omics and Trait Analyses of Marine Pseudoalteromonas Phages Advance the Phage OTU Concept 著者: Melissa B. Duhaime, Natalie Solonenko, Simon Roux, Nathan C. Verberkmoes, Antje Wichels, Matthew B. Sullivan, Matthew B. Sullivan

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iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. 著者: Simon Roux, Antonio Pedro Camargo, Felipe H Coutinho, Shareef M Dabdoub, Bas E Dutilh, Stephen Nayfach, Andrew Tritt

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Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem 著者: Clement Coclet, Patrick O. Sorensen, Ulas Karaoz, Shi Wang, Eoin L. Brodie, Emiley A. Eloe-Fadrosh, Simon Roux

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Early-life development of the gut virome and plasmidome: A longitudinal study in cesarean-born infants 著者: Asier Fernández-Pato, Trishla Sinha, Sanzhima Garmaeva, Anastasia Gulyaeva, Nataliia Kuzub, Simon Roux, Jingyuan Fu, Alexander Kurilshikov, Alexandra Zhernakova

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Putative archaeal viruses from the mesopelagic ocean 著者: Dean R. Vik, Simon Roux, Jennifer R. Brum, Ben Bolduc, Joanne B. Emerson, Cory C. Padilla, Frank J. Stewart, Matthew B. Sullivan

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Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics 著者: Simon Roux, Alyse K Hawley, Monica Torres Beltran, Melanie Scofield, Patrick Schwientek, Ramunas Stepanauskas, Tanja Woyke, Steven J Hallam, Matthew B Sullivan

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Towards quantitative viromics for both double-stranded and single-stranded DNA viruses 著者: Simon Roux, Natalie E. Solonenko, Vinh T. Dang, Bonnie T. Poulos, Sarah M. Schwenck, Dawn B. Goldsmith, Maureen L. Coleman, Mya Breitbart, Matthew B. Sullivan

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Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils 著者: Gareth Trubl, Simon Roux, Natalie Solonenko, Yueh-Fen Li, Benjamin Bolduc, Josué Rodríguez-Ramos, Emiley A. Eloe-Fadrosh, Virginia I. Rich, Matthew B. Sullivan

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Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth Strata and Iron Regimes of the Subantarctic Southern Ocean 著者: Naomi E. Gilbert, Gary R. LeCleir, Helena L. Pound, Robert F. Strzepek, Michael J. Ellwood, Benjamin S. Twining, Simon Roux, Philip W. Boyd, Steven W. Wilhelm

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