Search Results - Supriyo De

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  1. 1

    Homeodomain-only protein suppresses proliferation and contributes to differentiation- and age-related reduced CD8+ T cell expansion by Qian Yang, Michael Patrick, Jian Lu, Joseph Chen, Yongqing Zhang, Humza Hemani, Elin Lehrmann, Supriyo De, Nan-ping Weng

    Published in Frontiers in Immunology (2024-02-01)
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  2. 2

    Nicotinamide adenine dinucleotide supplementation drives gut microbiota variation in Alzheimer’s mouse model by Xixia Chu, Yujun Hou, Yujun Hou, Qiong Meng, Deborah L. Croteau, Deborah L. Croteau, Yong Wei, Supriyo De, Kevin G. Becker, Vilhelm A. Bohr

    Published in Frontiers in Aging Neuroscience (2022-09-01)
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  3. 3

    Interplay between CTCF-binding and CTCF-lacking regulatory elements in generating an architectural stripe at the Igh locus by Fei Ma, Noah Ollikainen, Hansen Du, Fatima Zohra Braikia, Nina Cui, Aisha Haley Bianchi, Christopher Dunn, Cuong Nguyen, Jinshui Fan, Supriyo De, Ranjan Sen, Xiang Qiu

    Published in Nature Communications (2025-03-01)
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  4. 4

    Extremely Long-Range Chromatin Loops Link Topological Domains to Facilitate a Diverse Antibody Repertoire by Lindsey Montefiori, Robert Wuerffel, Damian Roqueiro, Bryan Lajoie, Changying Guo, Tatiana Gerasimova, Supriyo De, William Wood, Kevin G. Becker, Job Dekker, Jie Liang, Ranjan Sen, Amy L. Kenter

    Published in Cell Reports (2016-02-01)
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  5. 5

    Lysine methyltransferase Kmt2d regulates naive CD8+ T cell activation-induced survival by Jaekwan Kim, Thomas Nguyen, Jeffrey Cifello, Raheel Ahmad, Yongqing Zhang, Qian Yang, Ji-Eun Lee, Xiang Li, Yan Kai, Supriyo De, Weiqun Peng, Kai Ge, Nan-ping Weng

    Published in Frontiers in Immunology (2023-01-01)
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  6. 6

    In-vitro human myogenesis model reveals novel mRNA alternative splicing isoforms by Stefano Donega, Nirad Banskota, Jen-Hao Yang, Martina Rossi, Yulan Piao, Dimitrios Tsitsipatis, Jinshui Fan, Supriyo De, Charlotte A. Peterson, Mary M. McDermott, Myriam Gorospe, Luigi Ferrucci

    Published in Scientific Reports (2025-10-01)
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  7. 7

    Topoisomerase 3β interacts with RNAi machinery to promote heterochromatin formation and transcriptional silencing in Drosophila by Seung Kyu Lee, Yutong Xue, Weiping Shen, Yongqing Zhang, Yuyoung Joo, Muzammil Ahmad, Madoka Chinen, Yi Ding, Wai Lim Ku, Supriyo De, Elin Lehrmann, Kevin G. Becker, Elissa P. Lei, Keji Zhao, Sige Zou, Alexei Sharov, Weidong Wang

    Published in Nature Communications (2018-11-01)
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  8. 8

    Pleiotropic effects of BAFF on the senescence-associated secretome and growth arrest by Martina Rossi, Carlos Anerillas, Maria Laura Idda, Rachel Munk, Chang Hoon Shin, Stefano Donega, Dimitrios Tsitsipatis, Allison B Herman, Jennifer L Martindale, Xiaoling Yang, Yulan Piao, Krystyna Mazan-Mamczarz, Jinshui Fan, Luigi Ferrucci, Peter F Johnson, Supriyo De, Kotb Abdelmohsen, Myriam Gorospe

    Published in eLife (2023-04-01)
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  9. 9

    A BDNF-TrkB autocrine loop enhances senescent cell viability by Carlos Anerillas, Allison B. Herman, Rachel Munk, Amanda Garrido, Kwan-Wood Gabriel Lam, Matthew J. Payea, Martina Rossi, Dimitrios Tsitsipatis, Jennifer L. Martindale, Yulan Piao, Krystyna Mazan-Mamczarz, Jinshui Fan, Chang-Yi Cui, Supriyo De, Kotb Abdelmohsen, Rafael de Cabo, Myriam Gorospe

    Published in Nature Communications (2022-10-01)
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  10. 10

    Cerebrospinal fluid exploratory proteomics and ketamine metabolite pharmacokinetics in human volunteers after ketamine infusion by Ruin Moaddel, Cristan A. Farmer, Mani Yavi, Bashkim Kadriu, Min Zhu, Jinshui Fan, Qinghua Chen, Elin Lehrmann, Giovanna Fantoni, Supriyo De, Caio H. Mazucanti, Elia E. Acevedo-Diaz, Peixiong Yuan, Todd D. Gould, Lawrence T. Park, Josephine M. Egan, Luigi Ferrucci, Carlos A. Zarate, Jr.

    Published in iScience (2023-12-01)
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  11. 11

    Spatial transcriptomics of the aging mouse brain reveals origins of inflammation in the white matter by Lin Wang, Chang-Yi Cui, Christopher T. Lee, Monica Bodogai, Na Yang, Changyou Shi, Mustafa O. Irfanoglu, James R. Occean, Sadia Afrin, Nishat Sarker, Ross A. McDevitt, Elin Lehrmann, Shahroze Abbas, Nirad Banskota, Jinshui Fan, Supriyo De, Peter Rapp, Arya Biragyn, Dan Benjamini, Manolis Maragkakis, Payel Sen

    Published in Nature Communications (2025-04-01)
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  12. 12

    Gene body DNA hydroxymethylation restricts the magnitude of transcriptional changes during aging by James R. Occean, Na Yang, Yan Sun, Marshall S. Dawkins, Rachel Munk, Cedric Belair, Showkat Dar, Carlos Anerillas, Lin Wang, Changyou Shi, Christopher Dunn, Michel Bernier, Nathan L. Price, Julie S. Kim, Chang-Yi Cui, Jinshui Fan, Moitrayee Bhattacharyya, Supriyo De, Manolis Maragkakis, Rafael de Cabo, Simone Sidoli, Payel Sen

    Published in Nature Communications (2024-07-01)
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  13. 13

    Skeletal Muscle mRNA Splicing Variants Association With Four Different Fitness and Energetic Measures in the GESTALT Study by Stefano Donega, Nirad Banskota, Esha Gupta, Marta Gonzalez‐Freire, Ann Zenobia Moore, Ceereena Ubaida‐Mohien, Rachel Munk, Linda Zukley, Yulan Piao, Chris Bergeron, Jan Bergeron, Arsun Bektas, Marta Zampino, Carole Stagg, Fred Indig, Lisa M. Hartnell, Mary Kaileh, Kenneth Fishbein, Richard G. Spencer, Myriam Gorospe, Supriyo De, Josephine M. Egan, Ranjan Sen, Luigi Ferrucci

    Published in Journal of Cachexia, Sarcopenia and Muscle (2025-02-01)
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  14. 14

    Epigenetic signature of human immune aging in the GESTALT study by Roshni Roy, Pei-Lun Kuo, Julián Candia, Dimitra Sarantopoulou, Ceereena Ubaida-Mohien, Dena Hernandez, Mary Kaileh, Sampath Arepalli, Amit Singh, Arsun Bektas, Jaekwan Kim, Ann Z Moore, Toshiko Tanaka, Julia McKelvey, Linda Zukley, Cuong Nguyen, Tonya Wallace, Christopher Dunn, William Wood, Yulan Piao, Christopher Coletta, Supriyo De, Jyoti Sen, Nan-ping Weng, Ranjan Sen, Luigi Ferrucci

    Published in eLife (2023-08-01)
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  15. 15

    DPP4 inhibition impairs senohemostasis to improve plaque stability in atherosclerotic mice by Allison B. Herman, Dimitrios Tsitsipatis, Carlos Anerillas, Krystyna Mazan-Mamczarz, Angelica E. Carr, Jordan M. Gregg, Mingyi Wang, Jing Zhang, Marc Michel, Charnae’ A. Henry-Smith, Sophia C. Harris, Rachel Munk, Jennifer L. Martindale, Yulan Piao, Jinshui Fan, Julie A. Mattison, Supriyo De, Kotb Abdelmohsen, Robert W. Maul, Toshiko Tanaka, Ann Zenobia Moore, Megan E. DeMouth, Simone Sidoli, Luigi Ferrucci, Yie Liu, Rafael de Cabo, Edward G. Lakatta, Myriam Gorospe

    Published in The Journal of Clinical Investigation (2023-06-01)
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  16. 16

    SARS-CoV-2 infection establishes a stable and age-independent CD8+ T cell response against a dominant nucleocapsid epitope using restricted T cell receptors by Cecily Choy, Joseph Chen, Jiangyuan Li, D. Travis Gallagher, Jian Lu, Daichao Wu, Ainslee Zou, Humza Hemani, Beverly A. Baptiste, Emily Wichmann, Qian Yang, Jeffrey Ciffelo, Rui Yin, Julia McKelvy, Denise Melvin, Tonya Wallace, Christopher Dunn, Cuong Nguyen, Chee W. Chia, Jinshui Fan, Jeannie Ruffolo, Linda Zukley, Guixin Shi, Tomokazu Amano, Yang An, Osorio Meirelles, Wells W. Wu, Chao-Kai Chou, Rong-Fong Shen, Richard A. Willis, Minoru S. H. Ko, Yu-Tsueng Liu, Supriyo De, Brian G. Pierce, Luigi Ferrucci, Josephine Egan, Roy Mariuzza, Nan-Ping Weng

    Published in Nature Communications (2023-10-01)
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  17. 17

    SUMOylation controls Hu antigen R posttranscriptional activity in liver cancer by Sofia Lachiondo-Ortega, Claudia M. Rejano-Gordillo, Jorge Simon, Fernando Lopitz-Otsoa, Teresa C. Delgado, Krystyna Mazan-Mamczarz, Naroa Goikoetxea-Usandizaga, L. Estefanía Zapata-Pavas, Ana García-del Río, Pietro Guerra, Patricia Peña-Sanfélix, Natalia Hermán-Sánchez, Ruba Al-Abdulla, Carmen Fernandez-Rodríguez, Mikel Azkargorta, Alejandro Velázquez-Cruz, Joris Guyon, César Martín, Juan Diego Zalamea, Leire Egia-Mendikute, Arantza Sanz-Parra, Marina Serrano-Maciá, Irene González-Recio, Monika Gonzalez-Lopez, Luis Alfonso Martínez-Cruz, Patrizia Pontisso, Ana M. Aransay, Rosa Barrio, James D. Sutherland, Nicola G.A. Abrescia, Félix Elortza, Amaia Lujambio, Jesus M. Banales, Raúl M. Luque, Manuel D. Gahete, Asís Palazón, Matias A. Avila, Jose J. G. Marin, Supriyo De, Thomas Daubon, Antonio Díaz-Quintana, Irene Díaz-Moreno, Myriam Gorospe, Manuel S. Rodríguez, María Luz Martínez-Chantar

    Published in Cell Reports (2024-03-01)
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  18. 18

    Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. by Rami A Dalloul, Julie A Long, Aleksey V Zimin, Luqman Aslam, Kathryn Beal, Le Ann Blomberg, Pascal Bouffard, David W Burt, Oswald Crasta, Richard P M A Crooijmans, Kristal Cooper, Roger A Coulombe, Supriyo De, Mary E Delany, Jerry B Dodgson, Jennifer J Dong, Clive Evans, Karin M Frederickson, Paul Flicek, Liliana Florea, Otto Folkerts, Martien A M Groenen, Tim T Harkins, Javier Herrero, Steve Hoffmann, Hendrik-Jan Megens, Andrew Jiang, Pieter de Jong, Pete Kaiser, Heebal Kim, Kyu-Won Kim, Sungwon Kim, David Langenberger, Mi-Kyung Lee, Taeheon Lee, Shrinivasrao Mane, Guillaume Marcais, Manja Marz, Audrey P McElroy, Thero Modise, Mikhail Nefedov, Cédric Notredame, Ian R Paton, William S Payne, Geo Pertea, Dennis Prickett, Daniela Puiu, Dan Qioa, Emanuele Raineri, Magali Ruffier, Steven L Salzberg, Michael C Schatz, Chantel Scheuring, Carl J Schmidt, Steven Schroeder, Stephen M J Searle, Edward J Smith, Jacqueline Smith, Tad S Sonstegard, Peter F Stadler, Hakim Tafer, Zhijian Jake Tu, Curtis P Van Tassell, Albert J Vilella, Kelly P Williams, James A Yorke, Liqing Zhang, Hong-Bin Zhang, Xiaojun Zhang, Yang Zhang, Kent M Reed

    Published in PLoS Biology (2010-09-01)
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