Search Results - Timothy D Read

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  1. 1

    'SEEDY' (Simulation of Evolutionary and Epidemiological Dynamics): An R Package to Follow Accumulation of Within-Host Mutation in Pathogens. by Colin J Worby, Timothy D Read

    Published in PLoS ONE (2015-01-01)
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  2. 2

    Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes by Robert A. Petit, Timothy D. Read

    Published in mSystems (2020-08-01)
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  3. 3

    Staphylococcus aureus viewed from the perspective of 40,000+ genomes by Robert A. Petit III, Timothy D. Read

    Published in PeerJ (2018-07-01)
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  4. 4

    The role of hypermutation and collateral sensitivity in antimicrobial resistance diversity of Pseudomonas aeruginosa populations in cystic fibrosis lung infection by Jelly Vanderwoude, Sheyda Azimi, Timothy D. Read, Stephen P. Diggle

    Published in mBio (2024-02-01)
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  5. 5

    Detecting patterns of accessory genome coevolution in Staphylococcus aureus using data from thousands of genomes by Rohan S Mehta, Robert A Petit, Timothy D Read, Daniel B Weissman

    Published in BMC Bioinformatics (2023-06-01)
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  6. 6

    Chlamydia suis undergoes interclade recombination promoting Tet-island exchange by Helena Seth-Smith, Sankhya Bommana, Deborah Dean, Timothy D. Read, Hanna Marti

    Published in BMC Genomics (2024-07-01)
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  7. 7

    Genotyping of Bacillus cereus strains by microarray-based resequencing. by Michael E Zwick, Maureen P Kiley, Andrew C Stewart, Alfred Mateczun, Timothy D Read

    Published in PLoS ONE (2008-01-01)
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  8. 8

    Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome by Vishnu Raghuram, Robert A. Petit, Zach Karol, Rohan Mehta, Daniel B. Weissman, Timothy D. Read

    Published in mSystems (2024-07-01)
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  9. 9

    Effect of genetic background on the evolution of Vancomycin-Intermediate Staphylococcus aureus (VISA) by Michelle Su, Michelle H. Davis, Jessica Peterson, Claudia Solis-Lemus, Sarah W. Satola, Timothy D. Read

    Published in PeerJ (2021-07-01)
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  10. 10

    Fine-scale differentiation between Bacillus anthracis and Bacillus cereus group signatures in metagenome shotgun data by Robert A. Petit III, James M. Hogan, Matthew N. Ezewudo, Sandeep J. Joseph, Timothy D. Read

    Published in PeerJ (2018-08-01)
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  11. 11

    The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data by Sandeep J. Joseph, Ben Li, Robert A. Petit III, Zhaohui S. Qin, Lyndsey Darrow, Timothy D. Read

    Published in PeerJ (2016-10-01)
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  12. 12

    A fluorescence-based protocol to monitor bacterial antagonism by Justin M. Luu, Cristian V. Crisan, Morgan L. Pettis, Anayancy Ramos Facio, Timothy D. Read, Joanna B. Goldberg

    Published in Microbiology Spectrum (2025-08-01)
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  13. 13

    Unique microbial diversity, community composition, and networks among Pacific Islander endocervical and vaginal microbiomes with and without Chlamydia trachomatis infection in Fiji by Sankhya Bommana, Yi-Juan Hu, Mike Kama, Ruohong Wang, Reshma Kodimerla, Kenan Jijakli, Timothy D. Read, Deborah Dean

    Published in mBio (2024-01-01)
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  14. 14

    Correction to: Protocol for the Emory University African American Vaginal, oral, and gut microbiome in pregnancy cohort study by Elizabeth J. Corwin, Carol J. Hogue, Bradley Pearce, Cherie C. Hill, Timothy D. Read, Jennifer Mulle, Anne L. Dunlop

    Published in BMC Pregnancy and Childbirth (2017-11-01)
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  15. 15

    Factors associated with foreign body infection in methicillin-resistant Staphylococcus aureus bacteremia by Kevin Bouiller, Kevin Bouiller, Natasia F. Jacko, Margot J. Shumaker, Brooke M. Talbot, Timothy D. Read, Michael Z. David

    Published in Frontiers in Immunology (2024-02-01)
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  16. 16

    Protocol for the Emory University African American Vaginal, Oral, and Gut Microbiome in Pregnancy Cohort Study by Elizabeth J. Corwin, Carol J. Hogue, Bradley Pearce, Cherie C. Hill, Timothy D. Read, Jennifer Mulle, Anne L. Dunlop

    Published in BMC Pregnancy and Childbirth (2017-06-01)
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  17. 17

    Transcriptional activation of ompA in Neisseria gonorrhoeae mediated by the XRE family member protein NceR by Concerta L. Holley, Vijaya Dhulipala, Stavaros A. Maurakis, Ashley Nicole Greenawalt, Timothy D. Read, Cynthia N. Cornelissen, William M. Shafer

    Published in mBio (2023-08-01)
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  18. 18

    Rapid multi-locus sequence typing using microfluidic biochips. by Timothy D Read, Rosemary S Turingan, Christopher Cook, Heidi Giese, Ulrich Hans Thomann, Catherine C Hogan, Eugene Tan, Richard F Selden

    Published in PLoS ONE (2010-05-01)
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  19. 19

    Genes Influencing Phage Host Range in Staphylococcus aureus on a Species-Wide Scale by Abraham G. Moller, Kyle Winston, Shiyu Ji, Junting Wang, Michelle N. Hargita Davis, Claudia R. Solís-Lemus, Timothy D. Read

    Published in mSphere (2021-02-01)
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  20. 20

    Shiftwork, functional bowel symptoms, and the microbiome by Ann E. Rogers, Yi-Juan Hu, Ye Yue, Emily F. Wissel, Robert A. Petit III, Simone Jarrett, Jennifer Christie, Timothy D. Read

    Published in PeerJ (2021-05-01)
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