The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data

In this study we developed a genome-based method for detecting Staphylococcus aureus subtypes from metagenome shotgun sequence data. We used a binomial mixture model and the coverage counts at >100,000 known S. aureus SNP (single nucleotide polymorphism) sites derived from prior comparative genom...

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Bibliographic Details

Published in:	PeerJ
Main Authors:	Sandeep J. Joseph, Ben Li, Robert A. Petit III, Zhaohui S. Qin, Lyndsey Darrow, Timothy D. Read
Format:	Article
Language:	English
Published:	PeerJ Inc. 2016-10-01
Subjects:	Staphylococcus aureus Microbiome Metagenomics
Online Access:	https://peerj.com/articles/2571.pdf