Search Results - Timothy D. Read

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  1. 1

    Staphylococcus aureus viewed from the perspective of 40,000+ genomes by Robert A. Petit III, Timothy D. Read

    Published in PeerJ (2018-07-01)
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  2. 2

    The role of hypermutation and collateral sensitivity in antimicrobial resistance diversity of Pseudomonas aeruginosa populations in cystic fibrosis lung infection by Jelly Vanderwoude, Sheyda Azimi, Timothy D. Read, Stephen P. Diggle

    Published in mBio (2024-02-01)
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  3. 3

    Detecting patterns of accessory genome coevolution in Staphylococcus aureus using data from thousands of genomes by Rohan S Mehta, Robert A Petit, Timothy D Read, Daniel B Weissman

    Published in BMC Bioinformatics (2023-06-01)
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  4. 4

    Chlamydia suis undergoes interclade recombination promoting Tet-island exchange by Helena Seth-Smith, Sankhya Bommana, Deborah Dean, Timothy D. Read, Hanna Marti

    Published in BMC Genomics (2024-07-01)
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  5. 5

    Genotyping of Bacillus cereus strains by microarray-based resequencing. by Michael E Zwick, Maureen P Kiley, Andrew C Stewart, Alfred Mateczun, Timothy D Read

    Published in PLoS ONE (2008-01-01)
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  6. 6

    Average nucleotide identity-based Staphylococcus aureus strain grouping allows identification of strain-specific genes in the pangenome by Vishnu Raghuram, Robert A. Petit, Zach Karol, Rohan Mehta, Daniel B. Weissman, Timothy D. Read

    Published in mSystems (2024-07-01)
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  7. 7

    Effect of genetic background on the evolution of Vancomycin-Intermediate Staphylococcus aureus (VISA) by Michelle Su, Michelle H. Davis, Jessica Peterson, Claudia Solis-Lemus, Sarah W. Satola, Timothy D. Read

    Published in PeerJ (2021-07-01)
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  8. 8

    Fine-scale differentiation between Bacillus anthracis and Bacillus cereus group signatures in metagenome shotgun data by Robert A. Petit III, James M. Hogan, Matthew N. Ezewudo, Sandeep J. Joseph, Timothy D. Read

    Published in PeerJ (2018-08-01)
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  9. 9

    The single-species metagenome: subtyping Staphylococcus aureus core genome sequences from shotgun metagenomic data by Sandeep J. Joseph, Ben Li, Robert A. Petit III, Zhaohui S. Qin, Lyndsey Darrow, Timothy D. Read

    Published in PeerJ (2016-10-01)
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  10. 10

    A fluorescence-based protocol to monitor bacterial antagonism by Justin M. Luu, Cristian V. Crisan, Morgan L. Pettis, Anayancy Ramos Facio, Timothy D. Read, Joanna B. Goldberg

    Published in Microbiology Spectrum (2025-08-01)
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  11. 11

    Unique microbial diversity, community composition, and networks among Pacific Islander endocervical and vaginal microbiomes with and without Chlamydia trachomatis infection in Fiji by Sankhya Bommana, Yi-Juan Hu, Mike Kama, Ruohong Wang, Reshma Kodimerla, Kenan Jijakli, Timothy D. Read, Deborah Dean

    Published in mBio (2024-01-01)
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  12. 12

    Factors associated with foreign body infection in methicillin-resistant Staphylococcus aureus bacteremia by Kevin Bouiller, Kevin Bouiller, Natasia F. Jacko, Margot J. Shumaker, Brooke M. Talbot, Timothy D. Read, Michael Z. David

    Published in Frontiers in Immunology (2024-02-01)
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  13. 13

    Transcriptional activation of ompA in Neisseria gonorrhoeae mediated by the XRE family member protein NceR by Concerta L. Holley, Vijaya Dhulipala, Stavaros A. Maurakis, Ashley Nicole Greenawalt, Timothy D. Read, Cynthia N. Cornelissen, William M. Shafer

    Published in mBio (2023-08-01)
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  14. 14

    Shiftwork, functional bowel symptoms, and the microbiome by Ann E. Rogers, Yi-Juan Hu, Ye Yue, Emily F. Wissel, Robert A. Petit III, Simone Jarrett, Jennifer Christie, Timothy D. Read

    Published in PeerJ (2021-05-01)
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  15. 15

    A multiplexed microfluidic PCR assay for sensitive and specific point-of-care detection of Chlamydia trachomatis. by Deborah Dean, Rosemary S Turingan, Hans-Ulrich Thomann, Anna Zolotova, James Rothschild, Sandeep J Joseph, Timothy D Read, Eugene Tan, Richard F Selden

    Published in PLoS ONE (2012-01-01)
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  16. 16

    Genomic analysis of variability in Delta-toxin levels between Staphylococcus aureus strains by Michelle Su, James T. Lyles, Robert A. Petit III, Jessica Peterson, Michelle Hargita, Huaqiao Tang, Claudia Solis-Lemus, Cassandra L. Quave, Timothy D. Read

    Published in PeerJ (2020-03-01)
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  17. 17

    Genomic insights into the evolution of secondary metabolism of Escovopsis and its allies, specialized fungal symbionts of fungus-farming ants by Aileen Berasategui, Hassan Salem, Abraham G. Moller, Yuliana Christopher, Quimi Vidaurre Montoya, Caitlin Conn, Timothy D. Read, Andre Rodrigues, Nadine Ziemert, Nicole Gerardo

    Published in mSystems (2024-07-01)
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  18. 18

    Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis by Sandeep J. Joseph, Sankhya Bommana, Noa Ziklo, Mike Kama, Deborah Dean, Deborah Dean, Deborah Dean, Deborah Dean, Deborah Dean, Deborah Dean, Timothy D. Read

    Published in Frontiers in Microbiology (2023-03-01)
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  19. 19

    Corrigendum: Patterns of within-host spread of Chlamydia trachomatis between vagina, endocervix and rectum revealed by comparative genomic analysis by Sandeep J. Joseph, Sankhya Bommana, Noa Ziklo, Mike Kama, Deborah Dean, Deborah Dean, Deborah Dean, Deborah Dean, Deborah Dean, Deborah Dean, Timothy D. Read

    Published in Frontiers in Microbiology (2024-06-01)
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  20. 20

    Comprehensive bioinformatics analysis of Mycoplasma pneumoniae genomes to investigate underlying population structure and type-specific determinants. by Maureen H Diaz, Heta P Desai, Shatavia S Morrison, Alvaro J Benitez, Bernard J Wolff, Jason Caravas, Timothy D Read, Deborah Dean, Jonas M Winchell

    Published in PLoS ONE (2017-01-01)
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