Robust expansion of phylogeny for fast-growing genome sequence data.

Massive sequencing of SARS-CoV-2 genomes has urged novel methods that employ existing phylogenies to add new samples efficiently instead of de novo inference. 'TIPars' was developed for such challenge integrating parsimony analysis with pre-computed ancestral sequences. It took about 21 se...

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Bibliographic Details
Published in:PLoS Computational Biology
Main Authors: Yongtao Ye, Marcus H Shum, Joseph L Tsui, Guangchuang Yu, David K Smith, Huachen Zhu, Joseph T Wu, Yi Guan, Tommy Tsan-Yuk Lam
Format: Article
Language:English
Published: Public Library of Science (PLoS) 2024-02-01
Online Access:https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011871&type=printable

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https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011871&type=printable

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