Robust expansion of phylogeny for fast-growing genome sequence data.

Massive sequencing of SARS-CoV-2 genomes has urged novel methods that employ existing phylogenies to add new samples efficiently instead of de novo inference. 'TIPars' was developed for such challenge integrating parsimony analysis with pre-computed ancestral sequences. It took about 21 se...

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Bibliographic Details
Published in:	PLoS Computational Biology
Main Authors:	Yongtao Ye, Marcus H Shum, Joseph L Tsui, Guangchuang Yu, David K Smith, Huachen Zhu, Joseph T Wu, Yi Guan, Tommy Tsan-Yuk Lam
Format:	Article
Language:	English
Published:	Public Library of Science (PLoS) 2024-02-01
Online Access:	https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1011871&type=printable

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