RoAM: computational reconstruction of ancient methylomes and identification of differentially methylated regions

Abstract We present a new and considerably improved version of RoAM (Reconstruction of Ancient Methylation), a flexible tool for reconstructing ancient methylomes and identifying differentially methylated regions (DMRs) between populations. Through a series of filtering and quality control steps, Ro...

詳細記述

書誌詳細
出版年:Genome Biology
主要な著者: Yoav Mathov, Naomi Rosen, Chen Leibson, Eran Meshorer, Benjamin Yakir, Liran Carmel
フォーマット: 論文
言語:英語
出版事項: BMC 2025-09-01
主題:
オンライン・アクセス:https://doi.org/10.1186/s13059-025-03702-7
その他の書誌記述
要約:Abstract We present a new and considerably improved version of RoAM (Reconstruction of Ancient Methylation), a flexible tool for reconstructing ancient methylomes and identifying differentially methylated regions (DMRs) between populations. Through a series of filtering and quality control steps, RoAM produces highly reliable DNA methylation maps, making it a valuable tool for paleoepigenomics studies. We apply RoAM to pre-and post-Neolithic transition Balkan samples, and uncover DMRs in genes related to sugar metabolism. Notably, we observe post-Neolithic hypermethylation of PTPRN2, a regulator of insulin secretion. These results are compatible with hypoinsulinism in pre-Neolithic hunter-gatherers.
ISSN:1474-760X