Isolation and profiling of viable tumor cells from human ex vivo glioblastoma cultures through single-cell transcriptomics
Summary: Single-cell RNA-sequencing (scRNA-seq) is becoming a ubiquitous method in profiling the cellular transcriptomes of both malignant and non-malignant cells from the human brain. Here, we present a protocol to isolate viable tumor cells from human ex vivo glioblastoma cultures for single-cell...
| Published in: | STAR Protocols |
|---|---|
| Main Authors: | Junyi Zhang, Jakob Straehle, Kevin Joseph, Nicolas Neidert, Simon Behringer, Jonathan Göldner, Andreas Vlachos, Marco Prinz, Christian Fung, Jürgen Beck, Oliver Schnell, Dieter Henrik Heiland, Vidhya M. Ravi |
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2023-09-01
|
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2666166723003507 |
Similar Items
Flow cytometry-based ex vivo murine NK cell cytotoxicity assay
by: Pamela Wong, et al.
Published: (2021-03-01)
by: Pamela Wong, et al.
Published: (2021-03-01)
Isolation and enrichment of mouse splenic T cells for ex vivo and in vivo T cell receptor stimulation assays
by: Clémence Grosjean, et al.
Published: (2021-12-01)
by: Clémence Grosjean, et al.
Published: (2021-12-01)
In vitro evaluation of CAR-T cells in patient-derived glioblastoma models
by: Benjamin A. Brakel, et al.
Published: (2021-12-01)
by: Benjamin A. Brakel, et al.
Published: (2021-12-01)
Protocols for endothelial cell isolation from mouse tissues: brain, choroid, lung, and muscle
by: Nadine V. Conchinha, et al.
Published: (2021-09-01)
by: Nadine V. Conchinha, et al.
Published: (2021-09-01)
Protocols for endothelial cell isolation from mouse tissues: small intestine, colon, heart, and liver
by: Liliana Sokol, et al.
Published: (2021-06-01)
by: Liliana Sokol, et al.
Published: (2021-06-01)
An optimized protocol for the isolation of rare stromal cell populations from the mouse spleen
by: Yannick O. Alexandre, et al.
Published: (2022-12-01)
by: Yannick O. Alexandre, et al.
Published: (2022-12-01)
Engineering the sialome of mammalian cells with sialic acid mimetics
by: Daniël L.A.H. Hornikx, et al.
Published: (2023-09-01)
by: Daniël L.A.H. Hornikx, et al.
Published: (2023-09-01)
Dissociation and flow cytometric isolation of murine intestinal epithelial cells for multi-omic profiling
by: Yong Ge, et al.
Published: (2023-03-01)
by: Yong Ge, et al.
Published: (2023-03-01)
Protocol for enrichment, purification, and cytocentrifugation of mouse liver endothelial cells
by: Shanin Chowdhury, et al.
Published: (2023-09-01)
by: Shanin Chowdhury, et al.
Published: (2023-09-01)
Protocol for the isolation and purification of human follicular dendritic cells for functional assays
by: Martijn Breeuwsma, et al.
Published: (2023-09-01)
by: Martijn Breeuwsma, et al.
Published: (2023-09-01)
A flow-cytometry-based assay to assess the cytolytic activity against tumor cells by combination of mouse MAIT cells and natural killer cells
by: Chie Sugimoto, et al.
Published: (2023-12-01)
by: Chie Sugimoto, et al.
Published: (2023-12-01)
Protocol for isolating human BCAM-positive corneal progenitor cells by flow cytometry and cell sorting
by: Yuzuru Sasamoto, et al.
Published: (2023-09-01)
by: Yuzuru Sasamoto, et al.
Published: (2023-09-01)
FluoroSpot assay to analyze SARS-CoV-2-specific T cell responses
by: Camilla Tiezzi, et al.
Published: (2023-12-01)
by: Camilla Tiezzi, et al.
Published: (2023-12-01)
FACS-assisted CRISPR-Cas9 genome editing of human induced pluripotent stem cells
by: Amandine Caillaud, et al.
Published: (2022-12-01)
by: Amandine Caillaud, et al.
Published: (2022-12-01)
Optimized protocol for mouse footpad immune cell isolation for single-cell RNA sequencing and flow cytometry
by: Muddassar Hameed, et al.
Published: (2023-09-01)
by: Muddassar Hameed, et al.
Published: (2023-09-01)
Protocol for high-sensitivity western blot on murine hematopoietic stem cells
by: Changzheng Li, et al.
Published: (2023-12-01)
by: Changzheng Li, et al.
Published: (2023-12-01)
Enriching for human acute myeloid leukemia stem cells using reactive oxygen species-based cell sorting
by: Brett M. Stevens, et al.
Published: (2021-03-01)
by: Brett M. Stevens, et al.
Published: (2021-03-01)
Recent Technologies on 2D and 3D Imaging Flow Cytometry
by: Masashi Ugawa, et al.
Published: (2024-12-01)
by: Masashi Ugawa, et al.
Published: (2024-12-01)
Detection of the CD8+ T cell immune response in mice infected with OVA-Listeria monocytogenes
by: Yudai Xu, et al.
Published: (2023-12-01)
by: Yudai Xu, et al.
Published: (2023-12-01)
Protocol to evaluate cell lineage stability of mouse natural and induced regulatory T cells using bisulfite sequencing
by: Masaya Arai, et al.
Published: (2022-12-01)
by: Masaya Arai, et al.
Published: (2022-12-01)
Protocol for isolation and analysis of the leukemia stem cells in BCR-ABL-driven chronic myelogenous leukemia mice
by: Chang Liu, et al.
Published: (2023-03-01)
by: Chang Liu, et al.
Published: (2023-03-01)
Longitudinal tracking of T cell lymphomas in mice using flow cytometry
by: Elizabeth A. Kuczynski, et al.
Published: (2023-06-01)
by: Elizabeth A. Kuczynski, et al.
Published: (2023-06-01)
Sensitive intranuclear flow cytometric quantification of IRF4 protein in multiple myeloma and normal human hematopoietic cells
by: Ashni A. Vora, et al.
Published: (2021-06-01)
by: Ashni A. Vora, et al.
Published: (2021-06-01)
Analyses of murine lymph node endothelial cell subsets using single-cell RNA sequencing and spectral flow cytometry
by: Lutz Menzel, et al.
Published: (2022-06-01)
by: Lutz Menzel, et al.
Published: (2022-06-01)
Enzyme-free isolation of mesenchymal stem cells from decidua basalis of the human placenta
by: Srishti Dutta Gupta, et al.
Published: (2023-09-01)
by: Srishti Dutta Gupta, et al.
Published: (2023-09-01)
Dissociation of intact adult mouse cortical projection neurons for single-cell RNA-seq
by: Noa Golan, et al.
Published: (2021-12-01)
by: Noa Golan, et al.
Published: (2021-12-01)
Flow cytometry analysis of endothelial cells and subsets of exhausted CD8+ T cells in murine tumor models
by: Lucas Blanchard, et al.
Published: (2022-06-01)
by: Lucas Blanchard, et al.
Published: (2022-06-01)
A biochemical reconstitution approach to identify autophagy receptors for aggrephagy in mammalian cells
by: Xinyu Ma, et al.
Published: (2022-09-01)
by: Xinyu Ma, et al.
Published: (2022-09-01)
Protocol for in vivo and ex vivo assessment of hyperglycemia and islet function in diabetic mice
by: Hao Chen, et al.
Published: (2023-03-01)
by: Hao Chen, et al.
Published: (2023-03-01)
Detection of exogenous DNA uptake by murine dendritic cells
by: Daiana P. Celias, et al.
Published: (2022-09-01)
by: Daiana P. Celias, et al.
Published: (2022-09-01)
Protocol for identifying immune checkpoint on circulating tumor cells of human pancreatic ductal adenocarcinoma by single-cell RNA sequencing
by: Xiaowei Liu, et al.
Published: (2023-09-01)
by: Xiaowei Liu, et al.
Published: (2023-09-01)
Detecting single cell interferon-beta production using a fluorescent reporter telomerase-immortalized human fibroblast cell line
by: David N. Hare, et al.
Published: (2021-06-01)
by: David N. Hare, et al.
Published: (2021-06-01)
Protocol to analyze chromatin-bound proteins through the cell cycle using Chromoflow flow cytometry
by: Dácil Alonso-Gil, et al.
Published: (2023-12-01)
by: Dácil Alonso-Gil, et al.
Published: (2023-12-01)
In vitro flow cytometry assay to assess primary human and mouse macrophage phagocytosis of live cells
by: Samantha Y. Liu, et al.
Published: (2023-06-01)
by: Samantha Y. Liu, et al.
Published: (2023-06-01)
Culture, expansion, and flow-cytometry-based functional analysis of pteropid bat MR1-restricted unconventional T cells
by: Wan Rong Sia, et al.
Published: (2021-06-01)
by: Wan Rong Sia, et al.
Published: (2021-06-01)
Isolation of human cutaneous immune cells for single-cell RNA sequencing
by: Ashley A. Hailer, et al.
Published: (2023-06-01)
by: Ashley A. Hailer, et al.
Published: (2023-06-01)
Protocol to measure calcium spikes in cardiomyocytes obtained from human pluripotent stem cells using a ready-to-use media
by: Veronica Astro, et al.
Published: (2023-06-01)
by: Veronica Astro, et al.
Published: (2023-06-01)
In vitro expansion of Wilms’ tumor protein 1 epitope-specific primary T cells from healthy human peripheral blood mononuclear cells
by: Sanne van der Heijden, et al.
Published: (2023-03-01)
by: Sanne van der Heijden, et al.
Published: (2023-03-01)
Protocol to identify and analyze mouse and human quiescent hematopoietic stem cells using flow cytometry combined with confocal imaging
by: Jiajing Qiu, et al.
Published: (2022-12-01)
by: Jiajing Qiu, et al.
Published: (2022-12-01)
Protocol for analysis of G2/M DNA synthesis in human cells
by: Jianming Wang, et al.
Published: (2021-06-01)
by: Jianming Wang, et al.
Published: (2021-06-01)
Similar Items
-
Flow cytometry-based ex vivo murine NK cell cytotoxicity assay
by: Pamela Wong, et al.
Published: (2021-03-01) -
Isolation and enrichment of mouse splenic T cells for ex vivo and in vivo T cell receptor stimulation assays
by: Clémence Grosjean, et al.
Published: (2021-12-01) -
In vitro evaluation of CAR-T cells in patient-derived glioblastoma models
by: Benjamin A. Brakel, et al.
Published: (2021-12-01) -
Protocols for endothelial cell isolation from mouse tissues: brain, choroid, lung, and muscle
by: Nadine V. Conchinha, et al.
Published: (2021-09-01) -
Protocols for endothelial cell isolation from mouse tissues: small intestine, colon, heart, and liver
by: Liliana Sokol, et al.
Published: (2021-06-01)
