Pipeliner: A Nextflow-Based Framework for the Definition of Sequencing Data Processing Pipelines

The advent of high-throughput sequencing technologies has led to the need for flexible and user-friendly data preprocessing platforms. The Pipeliner framework provides an out-of-the-box solution for processing various types of sequencing data. It combines the Nextflow scripting language and Anaconda...

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Bibliographic Details

Published in:	Frontiers in Genetics
Main Authors:	Anthony Federico, Tanya Karagiannis, Kritika Karri, Dileep Kishore, Yusuke Koga, Joshua D. Campbell, Stefano Monti
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2019-06-01
Subjects:	pipeline development sequencing workflows Nextflow RNA-seq pipeline scRNA-seq pipeline
Online Access:	https://www.frontiersin.org/article/10.3389/fgene.2019.00614/full