Poly(A)-DG: A deep-learning-based domain generalization method to identify cross-species Poly(A) signal without prior knowledge from target species.
In eukaryotes, polyadenylation (poly(A)) is an essential process during mRNA maturation. Identifying the cis-determinants of poly(A) signal (PAS) on the DNA sequence is the key to understand the mechanism of translation regulation and mRNA metabolism. Although machine learning methods were widely us...
| Published in: | PLoS Computational Biology |
|---|---|
| Main Authors: | Yumin Zheng, Haohan Wang, Yang Zhang, Xin Gao, Eric P Xing, Min Xu |
| Format: | Article |
| Language: | English |
| Published: |
Public Library of Science (PLoS)
2020-11-01
|
| Online Access: | https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1008297&type=printable |
Similar Items
NAS-DG: Ultra-Fast NAS via Uncertainty Modeling for Domain Generalization
by: Keigo Wakayama, et al.
Published: (2025-01-01)
by: Keigo Wakayama, et al.
Published: (2025-01-01)
A Generalization of Poly-Cauchy Numbers and Their Properties
by: Takao Komatsu, et al.
Published: (2013-01-01)
by: Takao Komatsu, et al.
Published: (2013-01-01)
Performance of poly cultured fish species fed organic or commercial diets
by: Betina Muelbert, et al.
Published: (2020-10-01)
by: Betina Muelbert, et al.
Published: (2020-10-01)
Phylogenomic analysis of the understudied Neisseriaceae species reveals a poly- and paraphyletic Kingella genus
by: Daniel P. Morreale, et al.
Published: (2023-12-01)
by: Daniel P. Morreale, et al.
Published: (2023-12-01)
DG-GMsFEM for Problems in Perforated Domains with Non-Homogeneous Boundary Conditions
by: Valentin Alekseev, et al.
Published: (2021-06-01)
by: Valentin Alekseev, et al.
Published: (2021-06-01)
Additive Effects of Lithium Salts with Various Anionic Species in Poly (Methyl Methacrylate)
by: Asae Ito, et al.
Published: (2021-07-01)
by: Asae Ito, et al.
Published: (2021-07-01)
DG-TTA: Out-of-Domain Medical Image Segmentation Through Augmentation, Descriptor-Driven Domain Generalization, and Test-Time Adaptation
by: Christian Weihsbach, et al.
Published: (2025-09-01)
by: Christian Weihsbach, et al.
Published: (2025-09-01)
Reactive Oxygen Species-Regulated Conjugates Based on Poly(jasmine) Lactone for Simultaneous Delivery of Doxorubicin and Docetaxel
by: Jyoti Verma, et al.
Published: (2024-09-01)
by: Jyoti Verma, et al.
Published: (2024-09-01)
Polis e architettura / Polis and Architecture
by: Renato Nicolini
Published: (2014-09-01)
by: Renato Nicolini
Published: (2014-09-01)
Ultrasonic activation of inert poly(tetrafluoroethylene) enables piezocatalytic generation of reactive oxygen species
by: Yanfeng Wang, et al.
Published: (2021-06-01)
by: Yanfeng Wang, et al.
Published: (2021-06-01)
Time domain NMR evaluation of poly(vinyl alcohol) xerogels
by: Elton Jorge da Rocha Rodrigues, et al.
by: Elton Jorge da Rocha Rodrigues, et al.
On the Priority of the Aristotelian Polis over the Individual The Polis as a Hylomorphic Whole
by: Christos Panayides
Published: (2024-04-01)
by: Christos Panayides
Published: (2024-04-01)
On the Priority of the Aristotelian Polis over the Individual The Polis as a Hylomorphic Whole
by: Christos Panayides
Published: (2024-04-01)
by: Christos Panayides
Published: (2024-04-01)
Effects of Electrospinning on the Viability of Ten Species of Lactic Acid Bacteria in Poly(Ethylene Oxide) Nanofibers
by: Špela Zupančič, et al.
Published: (2019-09-01)
by: Špela Zupančič, et al.
Published: (2019-09-01)
Nontrivial solutions for a generalized poly-Laplacian system on finite graphs
by: Qi Wanting, et al.
Published: (2025-07-01)
by: Qi Wanting, et al.
Published: (2025-07-01)
The PolyMAX Frequency-Domain Method: A New Standard for Modal Parameter Estimation?
by: Bart Peeters, et al.
Published: (2004-01-01)
by: Bart Peeters, et al.
Published: (2004-01-01)
Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1
by: Guennadi Kozlov, et al.
Published: (2024-12-01)
by: Guennadi Kozlov, et al.
Published: (2024-12-01)
Poly-dopamine, poly-levodopa, and poly-norepinephrine coatings: Comparison of physico-chemical and biological properties with focus on the application for blood-contacting devices
by: Xing Tan, et al.
Published: (2021-01-01)
by: Xing Tan, et al.
Published: (2021-01-01)
Preparation and Characterization of Poly(Lactic Acid)/Poly (ethylene glycol)-Poly(propyl glycol)-Poly(ethylene glycol) Blended Nanofiber Membranes for Fog Collection
by: Muhammad Omer Aijaz, et al.
Published: (2022-12-01)
by: Muhammad Omer Aijaz, et al.
Published: (2022-12-01)
TED-Seq Identifies the Dynamics of Poly(A) Length during ER Stress
by: Yu Mi Woo, et al.
Published: (2018-09-01)
by: Yu Mi Woo, et al.
Published: (2018-09-01)
Removal characteristics for nine species of per-and poly-fluoroalkyl substances using different types of anion exchange
by: Heejong Son, et al.
Published: (2024-12-01)
by: Heejong Son, et al.
Published: (2024-12-01)
Species differences in opsonization and phagocyte recognition of preclinical poly-2-alkyl-2-oxazoline-coated nanoparticles
by: R. Tavano, et al.
Published: (2025-03-01)
by: R. Tavano, et al.
Published: (2025-03-01)
The biological integrity of natural poly-species symbiotic bacterial communities for the production of kefir: Basic aspects of the preservation
by: Sokolova O. V., et al.
Published: (2024-06-01)
by: Sokolova O. V., et al.
Published: (2024-06-01)
Silencing of Poly(ADP-Ribose) Polymerase-2 Induces Mitochondrial Reactive Species Production and Mitochondrial Fragmentation
by: Laura Jankó, et al.
Published: (2021-06-01)
by: Laura Jankó, et al.
Published: (2021-06-01)
Polis Issa
by: Veljko Barbieri
Published: (1991-01-01)
by: Veljko Barbieri
Published: (1991-01-01)
PolyTransfer
by: S. Terri Gomez, et al.
Published: (2017-12-01)
by: S. Terri Gomez, et al.
Published: (2017-12-01)
Synthesis of poly (N-isopropylacrylamide)-poly(ε-caprolactone) for temperature-controlled wettability of poly(L-lactic acid)
by: Jian Lu, et al.
Published: (2024-01-01)
by: Jian Lu, et al.
Published: (2024-01-01)
Relationship between capsule production and biofilm formation by Mannheimia haemolytica, and establishment of a poly-species biofilm with other Pasteurellaceae
by: Yue-Jia Lee, et al.
Published: (2024-12-01)
by: Yue-Jia Lee, et al.
Published: (2024-12-01)
Polaron Hopping in Nano-scale Poly(dA)–Poly(dT) DNA
by: Singh Mahi, et al.
Published: (2010-01-01)
by: Singh Mahi, et al.
Published: (2010-01-01)
Molecular basis of eRF3 recognition by the MLLE domain of poly(A)-binding protein.
by: Guennadi Kozlov, et al.
Published: (2010-04-01)
by: Guennadi Kozlov, et al.
Published: (2010-04-01)
Effect of homopolymer poly(vinyl acetate) on compatibility and mechanical properties of poly(propylene carbonate)/poly(lactic acid) blends
by: J. Gao, et al.
Published: (2012-11-01)
by: J. Gao, et al.
Published: (2012-11-01)
Poly(ethylene glycol)-poly(tetrahydrofuran)-poly(ethylene glycol) triblock copolymer : Synthesis, crystallization behavior and novel morphology
by: X. Q. Liao, et al.
Published: (2013-05-01)
by: X. Q. Liao, et al.
Published: (2013-05-01)
A novel method to identify pre-microRNA in various species knowledge base on various species
by: Tianyi Zhao, et al.
Published: (2017-09-01)
by: Tianyi Zhao, et al.
Published: (2017-09-01)
Chronic meningococcemia presenting with recurrent painful rash and poly-arthralgia without fever
by: C. Delwaide, et al.
Published: (2018-01-01)
by: C. Delwaide, et al.
Published: (2018-01-01)
Semicontinuous Microemulsion Polymerization of Polymeric Nanoparticles of Poly(cyanoacrylates) and Poly(caprolactone)
by: Gerardo León-Sánchez, et al.
Published: (2025-06-01)
by: Gerardo León-Sánchez, et al.
Published: (2025-06-01)
Smart Polymer Blends of Poly(N-vinylcaprolactam) and Poly(lactic Acid)
by: Grazielle R. Cerqueira, et al.
Published: (2025-07-01)
by: Grazielle R. Cerqueira, et al.
Published: (2025-07-01)
Langmuir Films of Poly(-Toluidine) and Poly(-Methoxyaniline) at the Water–Air Interface
by: Iryna Opaynych, et al.
Published: (2007-02-01)
by: Iryna Opaynych, et al.
Published: (2007-02-01)
Optical Study on Poly(methyl methacrylate)/Poly(vinyl acetate) Blends
by: R. M. Ahmed
Published: (2009-01-01)
by: R. M. Ahmed
Published: (2009-01-01)
Extraction and Quantification of Poly P, Poly P Analysis by Urea-PAGE
by: Rosario Gomez-Garcia
Published: (2014-05-01)
by: Rosario Gomez-Garcia
Published: (2014-05-01)
Recent Progress on Poly(3,4‐Ethylenedioxythiophene):Poly(Styrenesulfonate) Bioelectrodes
by: Xiaojia Du, et al.
Published: (2023-07-01)
by: Xiaojia Du, et al.
Published: (2023-07-01)
Similar Items
-
NAS-DG: Ultra-Fast NAS via Uncertainty Modeling for Domain Generalization
by: Keigo Wakayama, et al.
Published: (2025-01-01) -
A Generalization of Poly-Cauchy Numbers and Their Properties
by: Takao Komatsu, et al.
Published: (2013-01-01) -
Performance of poly cultured fish species fed organic or commercial diets
by: Betina Muelbert, et al.
Published: (2020-10-01) -
Phylogenomic analysis of the understudied Neisseriaceae species reveals a poly- and paraphyletic Kingella genus
by: Daniel P. Morreale, et al.
Published: (2023-12-01) -
DG-GMsFEM for Problems in Perforated Domains with Non-Homogeneous Boundary Conditions
by: Valentin Alekseev, et al.
Published: (2021-06-01)
