Topological Data Analysis of C. elegans Locomotion and Behavior

We apply topological data analysis to the behavior of C. elegans, a widely studied model organism in biology. In particular, we use topology to produce a quantitative summary of complex behavior which may be applied to high-throughput data. Our methods allow us to distinguish and classify videos fro...

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Bibliographic Details

Published in:	Frontiers in Artificial Intelligence
Main Authors:	Ashleigh Thomas, Kathleen Bates, Alex Elchesen, Iryna Hartsock, Hang Lu, Peter Bubenik
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2021-06-01
Subjects:	persistent homology topological data analysis delay embedding sliding window embedding C. elegans behavior phenotyping
Online Access:	https://www.frontiersin.org/articles/10.3389/frai.2021.668395/full