Optimizing genotype imputation pipeline for low-coverage whole genome sequencing data in spotted sea bass and its application in genomic prediction

Genotype imputation following low-coverage whole genome sequencing (lcWGS) data offers a cost-effective approach for genotyping large populations, with significant potential to accelerate genomic selection in breeding programs. For spotted sea bass (Lateolabrax maculatus), genetic improvement is urg...

Full description

Bibliographic Details

Published in:	Aquaculture Reports
Main Authors:	Chong Zhang, Yonghang Zhang, Pengyu Li, Cong Liu, Lingyu Wang, Yani Dong, Donglei Sun, Xin Qi, Haishen Wen, Kaiqiang Zhang, Shaosen Yang, Yun Li
Format:	Article
Language:	English
Published:	Elsevier 2025-12-01
Subjects:	Low-coverage whole genome sequencing Genotype imputation Reference panel Lateolabrax maculatus Genomic prediction
Online Access:	http://www.sciencedirect.com/science/article/pii/S2352513425004740