Integration of ATAC-seq and RNA-seq identifies MX1-mediated AP-1 transcriptional regulation as a therapeutic target for Down syndrome
Abstract Background Growing evidence has suggested that Type I Interferon (I-IFN) plays a potential role in the pathogenesis of Down Syndrome (DS). This work investigates the underlying function of MX1, an effector gene of I-IFN, in DS-associated transcriptional regulation and phenotypic modulation....
| 出版年: | Biological Research |
|---|---|
| 主要な著者: | Zhenglong Guo, Yongchang Zhu, Hai Xiao, Ranran Dai, Wenke Yang, Wei Xue, Xueying Zhang, Bingtao Hao, Shixiu Liao |
| フォーマット: | 論文 |
| 言語: | 英語 |
| 出版事項: |
BMC
2023-12-01
|
| 主題: | |
| オンライン・アクセス: | https://doi.org/10.1186/s40659-023-00474-x |
類似資料
scATAC-seq generates more accurate and complete regulatory maps than bulk ATAC-seq
著者:: E. Ravza Gur, 等
出版事項: (2025-01-01)
著者:: E. Ravza Gur, 等
出版事項: (2025-01-01)
Investigation of the effects of phthalates on in vitro thyroid models with RNA-Seq and ATAC-Seq
著者:: Marta Nazzari, 等
出版事項: (2023-09-01)
著者:: Marta Nazzari, 等
出版事項: (2023-09-01)
Establishing an optimized ATAC-seq protocol for the maize
著者:: Jo-Wei Allison Hsieh, 等
出版事項: (2024-05-01)
著者:: Jo-Wei Allison Hsieh, 等
出版事項: (2024-05-01)
Identify key transcript factors of adipocyte differentiation in abdominal fat of broilers based on ATAC-seq and RNA-seq
著者:: Xiaoying Liu, 等
出版事項: (2025-05-01)
著者:: Xiaoying Liu, 等
出版事項: (2025-05-01)
GUAVA: A Graphical User Interface for the Analysis and Visualization of ATAC-seq Data
著者:: Mayur Divate, 等
出版事項: (2018-07-01)
著者:: Mayur Divate, 等
出版事項: (2018-07-01)
simATAC: a single-cell ATAC-seq simulation framework
著者:: Zeinab Navidi, 等
出版事項: (2021-03-01)
著者:: Zeinab Navidi, 等
出版事項: (2021-03-01)
Integrative ATAC-seq and RNA-seq Analysis of the Longissimus Muscle of Luchuan and Duroc Pigs
著者:: Weiwei Miao, 等
出版事項: (2021-09-01)
著者:: Weiwei Miao, 等
出版事項: (2021-09-01)
Integration of RNA-seq and ATAC-seq identifies muscle-regulated hub genes in cattle
著者:: Jianfang Wang, 等
出版事項: (2022-08-01)
著者:: Jianfang Wang, 等
出版事項: (2022-08-01)
Integrative single-cell RNA-seq and ATAC-seq analysis of myogenic differentiation in pig
著者:: Shufang Cai, 等
出版事項: (2023-02-01)
著者:: Shufang Cai, 等
出版事項: (2023-02-01)
Combining ATAC-seq and RNA-seq reveals key genes for gonadal abnormalities in one-month-old XX-DSD pigs
著者:: Congying Yu, 等
出版事項: (2025-05-01)
著者:: Congying Yu, 等
出版事項: (2025-05-01)
I-ATAC: interactive pipeline for the management and pre-processing of ATAC-seq samples
著者:: Zeeshan Ahmed, 等
出版事項: (2017-11-01)
著者:: Zeeshan Ahmed, 等
出版事項: (2017-11-01)
ATAC-seq and RNA-seq analysis unravel the mechanism of sex differentiation and infertility in sex reversal chicken
著者:: Xiuan Zhang, 等
出版事項: (2023-01-01)
著者:: Xiuan Zhang, 等
出版事項: (2023-01-01)
Integration of ATAC-seq and RNA-seq reveals signal regulation during post-molt and inter-molt stages in muscle of Eriocheir sinensis
著者:: Bin Wang, 等
出版事項: (2025-01-01)
著者:: Bin Wang, 等
出版事項: (2025-01-01)
Integration of ATAC-Seq and RNA-Seq reveals FOSL2 drives human liver progenitor-like cell aging by regulating inflammatory factors
著者:: Min Ding, 等
出版事項: (2023-05-01)
著者:: Min Ding, 等
出版事項: (2023-05-01)
Integrated analysis of ATAC-seq and RNA-seq reveals ADSCP2 regulates oxidative phosphorylation pathway in hypertrophic scar fibroblasts
著者:: Qian Li, 等
出版事項: (2025-01-01)
著者:: Qian Li, 等
出版事項: (2025-01-01)
RNA-Seq and ATAC-Seq Reveal CYP26A1-Mediated Regulation of Retinoic Acid-Induced Meiosis in Chicken Primordial Germ Cells
著者:: Zhaochuan Wang, 等
出版事項: (2024-12-01)
著者:: Zhaochuan Wang, 等
出版事項: (2024-12-01)
Identification of transcription factor binding sites using ATAC-seq
著者:: Zhijian Li, 等
出版事項: (2019-02-01)
著者:: Zhijian Li, 等
出版事項: (2019-02-01)
Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads
著者:: Florian V De Rop, 等
出版事項: (2022-02-01)
著者:: Florian V De Rop, 等
出版事項: (2022-02-01)
Integrated ATAC-seq and RNA-seq Analysis of In Vitro Cultured Skeletal Muscle Satellite Cells to Understand Changes in Cell Proliferation
著者:: Zeyu Ren, 等
出版事項: (2024-06-01)
著者:: Zeyu Ren, 等
出版事項: (2024-06-01)
Integration ATAC‐Seq and RNA‐Seq Analysis of Mammary Placodes in Erhualian and Bamaxiang Pigs Identified Candidate Genes Influencing Pig Teat Number Variation
著者:: Chenxi Liu, 等
出版事項: (2025-07-01)
著者:: Chenxi Liu, 等
出版事項: (2025-07-01)
Benchmarking automated cell type annotation tools for single-cell ATAC-seq data
著者:: Yuge Wang, 等
出版事項: (2022-12-01)
著者:: Yuge Wang, 等
出版事項: (2022-12-01)
Muscle growth differences in Lijiang pigs revealed by ATAC-seq multi-omics
著者:: Yi Lan, 等
出版事項: (2024-08-01)
著者:: Yi Lan, 等
出版事項: (2024-08-01)
Ribosome biogenesis disruption mediated chromatin structure changes revealed by SRAtac, a customizable end to end analysis pipeline for ATAC-seq
著者:: Trevor F. Freeman, 等
出版事項: (2023-09-01)
著者:: Trevor F. Freeman, 等
出版事項: (2023-09-01)
scDART: integrating unmatched scRNA-seq and scATAC-seq data and learning cross-modality relationship simultaneously
著者:: Ziqi Zhang, 等
出版事項: (2022-06-01)
著者:: Ziqi Zhang, 等
出版事項: (2022-06-01)
Detecting Differential Transcription Factor Activity from ATAC-Seq Data
著者:: Ignacio J. Tripodi, 等
出版事項: (2018-05-01)
著者:: Ignacio J. Tripodi, 等
出版事項: (2018-05-01)
Integrative RNA-seq and ATAC-seq analysis unveils antioxidant defense mechanisms in salt-tolerant rice variety Pokkali
著者:: Qiaoyu Yang, 等
出版事項: (2025-03-01)
著者:: Qiaoyu Yang, 等
出版事項: (2025-03-01)
Copy number normalization distinguishes differential signals driven by copy number differences in ATAC-seq and ChIP-seq
著者:: Dingwen Su, 等
出版事項: (2025-03-01)
著者:: Dingwen Su, 等
出版事項: (2025-03-01)
ATAC-Seq Identifies Chromatin Landscapes Linked to the Regulation of Oxidative Stress in the Human Fungal Pathogen <i>Candida albicans</i>
著者:: Sabrina Jenull, 等
出版事項: (2020-09-01)
著者:: Sabrina Jenull, 等
出版事項: (2020-09-01)
Integration of RNA-seq and ATAC-seq analyzes the effect of low dose neutron-γ radiation on gene expression of lymphocytes from oilfield logging workers
著者:: Weiguo Li, 等
出版事項: (2023-11-01)
著者:: Weiguo Li, 等
出版事項: (2023-11-01)
ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data
著者:: Jianhong Ou, 等
出版事項: (2018-03-01)
著者:: Jianhong Ou, 等
出版事項: (2018-03-01)
Assaying Chromatin Accessibility Using ATAC-Seq in Invertebrate Chordate Embryos
著者:: Marta Silvia Magri, 等
出版事項: (2020-01-01)
著者:: Marta Silvia Magri, 等
出版事項: (2020-01-01)
Single-cell ATAC-seq signal extraction and enhancement with SCATE
著者:: Zhicheng Ji, 等
出版事項: (2020-07-01)
著者:: Zhicheng Ji, 等
出版事項: (2020-07-01)
Robust estimation of cancer and immune cell-type proportions from bulk tumor ATAC-Seq data
著者:: Aurélie Anne-Gaëlle Gabriel, 等
出版事項: (2024-10-01)
著者:: Aurélie Anne-Gaëlle Gabriel, 等
出版事項: (2024-10-01)
Transcriptomic, metabolomic, and ATAC-seq analysis reveal the regulatory mechanism of senescence of post-harvest tomato fruit
著者:: Susu Guo, 等
出版事項: (2023-03-01)
著者:: Susu Guo, 等
出版事項: (2023-03-01)
ATAC-seq reveals the roles of chromatin accessibility in the chondrocytes of Kashin–Beck disease compared with primary osteoarthritis
著者:: Sen Wang, 等
出版事項: (2023-05-01)
著者:: Sen Wang, 等
出版事項: (2023-05-01)
Structure-guided integrative soft deep clustering analysis of scRNA-seq and scATAC-seq data
著者:: Jiang Xingzuo, 等
出版事項: (2025-09-01)
著者:: Jiang Xingzuo, 等
出版事項: (2025-09-01)
Integrative Analysis of ATAC-Seq and RNA-Seq through Machine Learning Identifies 10 Signature Genes for Breast Cancer Intrinsic Subtypes
著者:: Jeong-Woon Park, 等
出版事項: (2024-10-01)
著者:: Jeong-Woon Park, 等
出版事項: (2024-10-01)
ATACAmp: a tool for detecting ecDNA/HSRs from bulk and single-cell ATAC-seq data
著者:: Hansen Cheng, 等
出版事項: (2023-11-01)
著者:: Hansen Cheng, 等
出版事項: (2023-11-01)
Integrative RNA-Seq and ATAC-Seq Analysis Reveals the Migration-Associated Genes Involved in Antitumor Effects of Herbal Medicine Feiyanning on Lung Cancer Cells
著者:: Chenyang Wang, 等
出版事項: (2021-12-01)
著者:: Chenyang Wang, 等
出版事項: (2021-12-01)
Integrated ATAC‐seq and RNA‐seq analysis identifies key regulatory elements in NK cells activated with feeder cells and IL‐2
著者:: Pedram Motallebnejad, 等
出版事項: (2025-05-01)
著者:: Pedram Motallebnejad, 等
出版事項: (2025-05-01)
類似資料
-
scATAC-seq generates more accurate and complete regulatory maps than bulk ATAC-seq
著者:: E. Ravza Gur, 等
出版事項: (2025-01-01) -
Investigation of the effects of phthalates on in vitro thyroid models with RNA-Seq and ATAC-Seq
著者:: Marta Nazzari, 等
出版事項: (2023-09-01) -
Establishing an optimized ATAC-seq protocol for the maize
著者:: Jo-Wei Allison Hsieh, 等
出版事項: (2024-05-01) -
Identify key transcript factors of adipocyte differentiation in abdominal fat of broilers based on ATAC-seq and RNA-seq
著者:: Xiaoying Liu, 等
出版事項: (2025-05-01) -
GUAVA: A Graphical User Interface for the Analysis and Visualization of ATAC-seq Data
著者:: Mayur Divate, 等
出版事項: (2018-07-01)
