Quality Control of Next-Generation Sequencing-Based HIV-1 Drug Resistance Data in Clinical Laboratory Information Systems Framework

by Rupert Capina, Katherine Li, Levon Kearney, Anne-Mieke Vandamme, P. Richard Harrigan, Kristel Van Laethem
Published 2020-06-01

Application of a Sanger-Based External Quality Assurance Strategy for the Transition of HIV-1 Drug Resistance Assays to Next Generation Sequencing

by Cheryl Jennings, Neil T. Parkin, Daniel J. Zaccaro, Rupert Capina, Paul Sandstrom, Hezhao Ji, Donald J. Brambilla, James W. Bremer
Published 2020-12-01

A MiSeq-HyDRA platform for enhanced HIV drug resistance genotyping and surveillance

by Tracy Taylor, Emma R. Lee, Mikaela Nykoluk, Eric Enns, Binhua Liang, Rupert Capina, Marie-Krystel Gauthier, Gary Van Domselaar, Paul Sandstrom, James Brooks, Hezhao Ji
Published 2019-06-01

HIV-1 phylodynamic analysis among people who inject drugs in Pakistan correlates with trends in illicit opioid trade.

by François Cholette, Jeffrey Joy, Yann Pelcat, Laura H Thompson, Richard Pilon, John Ho, Rupert Capina, Chris Archibald, James F Blanchard, Faran Emmanuel, Tahira Reza, Nosheen Dar, Richard Harrigan, John Kim, Paul Sandstrom
Published 2020-01-01

A comparison of parallel pyrosequencing and sanger clone-based sequencing and its impact on the characterization of the genetic diversity of HIV-1.

by Binhua Liang, Ma Luo, Joel Scott-Herridge, Christina Semeniuk, Mark Mendoza, Rupert Capina, Brent Sheardown, Hezhao Ji, Joshua Kimani, Blake T Ball, Gary Van Domselaar, Morag Graham, Shane Tyler, Steven J M Jones, Francis A Plummer
Published 2011-01-01

HIV-1 clade D is associated with increased rates of CD4 decline in a Kenyan cohort.

by Lyle R McKinnon, Nico J Nagelkerke, Rupert Kaul, Souradet Y Shaw, Rupert Capina, Ma Luo, Anthony Kariri, Winnie Apidi, Makobu Kimani, Charles Wachihi, Walter Jaoko, A Omu Anzala, Joshua Kimani, T Blake Ball, Francis A Plummer
Published 2012-01-01