Bioinformatics strategies for taxonomy independent binning and visualization of sequences in shotgun metagenomics

by Karel Sedlar, Kristyna Kupkova, Ivo Provaznik
Published 2017-01-01

Bipartite Graphs for Visualization Analysis of Microbiome Data

by Karel Sedlar, Petra Videnska, Helena Skutkova, Ivan Rychlik, Ivo Provaznik
Published 2016-05-01

Bipartite Graphs for Visualization Analysis of Microbiome Data

by Karel Sedlar, Petra Videnska, Helena Skutkova, Ivan Rychlik, Ivo Provaznik
Published 2016-01-01

Rapid Bacterial Species Delineation Based on Parameters Derived From Genome Numerical Representations

by Denisa Maderankova, Robin Jugas, Karel Sedlar, Martin Vitek, Helena Skutkova
Published 2019-01-01

A degeneration-reducing criterion for optimal digital mapping of genetic codes

by Helena Skutkova, Denisa Maderankova, Karel Sedlar, Robin Jugas, Martin Vitek
Published 2019-01-01

Word Entropy-Based Approach to Detect Highly Variable Genetic Markers for Bacterial Genotyping

by Marketa Nykrynova, Vojtech Barton, Karel Sedlar, Matej Bezdicek, Martina Lengerova, Helena Skutkova
Published 2021-02-01

Phenotypic and Genomic Analysis of Clostridium beijerinckii NRRL B-598 Mutants With Increased Butanol Tolerance

by Maryna Vasylkivska, Barbora Branska, Karel Sedlar, Katerina Jureckova, Ivo Provaznik, Petra Patakova
Published 2020-11-01

Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598.

by Maryna Vasylkivska, Katerina Jureckova, Barbora Branska, Karel Sedlar, Jan Kolek, Ivo Provaznik, Petra Patakova
Published 2019-01-01

Free-Living Enterobacterium 24613: Complete Genome Sequence and Metabolic Profiling

by Kateřina Snopková, Karel Sedlář, Juraj Bosák, Eva Chaloupková, Ivo Sedláček, Ivo Provazník, David Šmajs
Published 2017-03-01

Stool sampling and DNA isolation kits affect DNA quality and bacterial composition following 16S rRNA gene sequencing using MiSeq Illumina platform

by Petra Videnska, Kristyna Smerkova, Barbora Zwinsova, Vlad Popovici, Lenka Micenkova, Karel Sedlar, Eva Budinska
Published 2019-09-01

Characterization of microbiota composition and presence of selected antibiotic resistance genes in carriage water of ornamental fish.

by Lenka Gerzova, Petra Videnska, Marcela Faldynova, Karel Sedlar, Ivo Provaznik, Alois Cizek, Ivan Rychlik
Published 2014-01-01

Diversity and Evolution of <i>Clostridium beijerinckii</i> and Complete Genome of the Type Strain DSM 791^T

by Karel Sedlar, Marketa Nykrynova, Matej Bezdicek, Barbora Branska, Martina Lengerova, Petra Patakova, Helena Skutkova
Published 2021-07-01

Deeper below the surface—transcriptional changes in selected genes of Clostridium beijerinckii in response to butanol shock

by Petra Patakova, Jan Kolek, Katerina Jureckova, Barbora Branska, Karel Sedlar, Maryna Vasylkivska, Ivo Provaznik
Published 2021-02-01

Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-Seq

by Karel Sedlar, Pavlina Koscova, Maryna Vasylkivska, Barbora Branska, Jan Kolek, Kristyna Kupkova, Petra Patakova, Ivo Provaznik
Published 2018-05-01

Succession and replacement of bacterial populations in the caecum of egg laying hens over their whole life.

by Petra Videnska, Karel Sedlar, Maja Lukac, Marcela Faldynova, Lenka Gerzova, Darina Cejkova, Frantisek Sisak, Ivan Rychlik
Published 2014-01-01

The First Insight into Polyhydroxyalkanoates Accumulation in Multi-Extremophilic <i>Rubrobacter xylanophilus</i> and <i>Rubrobacter spartanus</i>

by Xenie Kouřilová, Jana Schwarzerová, Iva Pernicová, Karel Sedlář, Kateřina Mrázová, Vladislav Krzyžánek, Jana Nebesářová, Stanislav Obruča
Published 2021-04-01

Identification and Validation of Reference Genes in Clostridium beijerinckii NRRL B-598 for RT-qPCR Using RNA-Seq Data

by Katerina Jureckova, Hana Raschmanova, Jan Kolek, Maryna Vasylkivska, Barbora Branska, Petra Patakova, Ivo Provaznik, Karel Sedlar
Published 2021-03-01

Application of mini-MLST and whole genome sequencing in low diversity hospital extended-spectrum beta-lactamase producing Klebsiella pneumoniae population.

by Matej Bezdicek, Marketa Nykrynova, Kristina Plevova, Eva Brhelova, Iva Kocmanova, Karel Sedlar, Zdenek Racil, Jiri Mayer, Martina Lengerova
Published 2019-01-01

Rapid high-resolution melting genotyping scheme for Escherichia coli based on MLST derived single nucleotide polymorphisms

by Matej Bezdicek, Marketa Nykrynova, Karel Sedlar, Stanislava Kralova, Jana Hanslikova, Aja Komprdova, Helena Skutkova, Iva Kocmanova, Jiri Mayer, Martina Lengerova
Published 2021-08-01

A transcriptional response of Clostridium beijerinckii NRRL B-598 to a butanol shock

by Karel Sedlar, Jan Kolek, Markus Gruber, Katerina Jureckova, Barbora Branska, Gergely Csaba, Maryna Vasylkivska, Ralf Zimmer, Petra Patakova, Ivo Provaznik
Published 2019-10-01